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Mutant Information

Mutant Name	FN1420-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1420-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17856347	C-T	HET	INTERGENIC
SBS	Chr1	32784143	C-T	HET	UTR_5_PRIME
SBS	Chr1	32784144	A-T	HET	UTR_5_PRIME
SBS	Chr1	3811421	C-T	HET	INTRON
SBS	Chr1	41853803	A-T	HOMO	INTERGENIC
SBS	Chr10	14756579	G-A	HET	INTERGENIC
SBS	Chr10	19628958	G-C	HET	INTERGENIC
SBS	Chr11	16585888	C-T	HET	INTERGENIC
SBS	Chr11	18018852	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g30970
SBS	Chr11	5852277	T-A	HET	INTRON
SBS	Chr11	9398032	C-G	HET	INTERGENIC
SBS	Chr11	9398033	G-C	HET	INTERGENIC
SBS	Chr12	5052223	G-T	HET	INTERGENIC
SBS	Chr2	16302295	T-C	HOMO	INTERGENIC
SBS	Chr2	20470517	C-T	HOMO	INTRON
SBS	Chr3	14374711	A-C	HOMO	INTERGENIC
SBS	Chr3	30277570	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr3	34745428	C-A	HOMO	INTERGENIC
SBS	Chr4	8907100	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g16390
SBS	Chr5	17435107	C-T	HET	INTERGENIC
SBS	Chr5	22582515	C-T	HET	INTRON
SBS	Chr5	29004962	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g50600
SBS	Chr6	11847071	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	20452563	A-T	HET	INTERGENIC
SBS	Chr6	23303022	G-T	HET	INTERGENIC
SBS	Chr6	27607436	T-C	HET	INTERGENIC
SBS	Chr6	28058903	C-T	HET	INTERGENIC
SBS	Chr6	8139991	G-T	HET	INTERGENIC
SBS	Chr7	11202939	G-A	HET	INTRON
SBS	Chr7	13043056	C-A	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1222530	1222531	1
Deletion	Chr4	2219633	2219634	1
Deletion	Chr3	4505898	4505899	1
Deletion	Chr2	5473664	5473668	4
Deletion	Chr11	5949750	5949756	6
Deletion	Chr3	8137690	8137692	2
Deletion	Chr1	9141175	9141176	1
Deletion	Chr4	10534917	10534918	1
Deletion	Chr7	12563369	12567516	4147	2
Deletion	Chr10	13468157	13469781	1624	LOC_Os10g26010
Deletion	Chr3	14326903	14326904	1
Deletion	Chr2	15095468	15095469	1
Deletion	Chr5	15804515	15804516	1
Deletion	Chr4	18409024	18409026	2	LOC_Os04g30790
Deletion	Chr4	18453561	18453562	1
Deletion	Chr3	19108486	19108498	12
Deletion	Chr4	21593620	21593626	6	LOC_Os04g35480
Deletion	Chr6	23536984	23536988	4
Deletion	Chr1	24385371	24385376	5	LOC_Os01g42850
Deletion	Chr4	25498707	25498708	1
Deletion	Chr6	27748385	27748390	5
Deletion	Chr7	29012083	29012084	1	LOC_Os07g48510
Deletion	Chr2	32960773	32960774	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	2740150	2740150	1
Insertion	Chr2	29608488	29608492	5
Insertion	Chr6	21180561	21180561	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	6496873	7409535	LOC_Os08g11040
Inversion	Chr9	13168979	14004740
Inversion	Chr9	13168995	14004742
Inversion	Chr6	21507537	23340022	LOC_Os06g36600

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	13468173	Chr6	23337307	LOC_Os10g26010

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