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Mutant Information

Mutant Name	FN1422-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1422-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14416269	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g25450
SBS	Chr1	14653220	T-A	Homo	INTRON
SBS	Chr1	18782848	C-T	Homo	INTERGENIC
SBS	Chr1	31360478	T-C	HET	UTR_3_PRIME
SBS	Chr1	32143498	T-G	HET	INTERGENIC
SBS	Chr10	10306550	G-T	HET	INTERGENIC
SBS	Chr10	10742935	C-T	HET	INTERGENIC
SBS	Chr10	327580	G-A	HET	INTERGENIC
SBS	Chr11	5676749	A-G	HET	INTERGENIC
SBS	Chr11	6162982	C-T	HET	INTRON
SBS	Chr12	1445434	C-T	HET	INTERGENIC
SBS	Chr12	942259	C-A	HET	INTRON
SBS	Chr2	1380552	C-A	HET	INTRON
SBS	Chr2	15091241	G-A	Homo	INTRON
SBS	Chr2	19900701	C-T	HET	INTERGENIC
SBS	Chr2	35182622	G-C	HET	INTRON
SBS	Chr2	9540044	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g16690
SBS	Chr3	16707129	G-A	HET	INTERGENIC
SBS	Chr4	10201046	G-A	Homo	INTERGENIC
SBS	Chr4	13911886	G-A	HET	INTERGENIC
SBS	Chr4	17434177	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g29350
SBS	Chr4	32657789	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g54900
SBS	Chr4	32657790	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g54900
SBS	Chr4	5205191	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g09710
SBS	Chr4	5205193	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr5	27144432	G-A	HET	INTERGENIC
SBS	Chr5	28483827	C-T	HET	INTERGENIC
SBS	Chr5	3136765	G-A	Homo	INTERGENIC
SBS	Chr6	2576921	G-A	HET	INTERGENIC
SBS	Chr6	9151103	G-C	HET	INTERGENIC
SBS	Chr7	20691102	C-T	Homo	UTR_3_PRIME
SBS	Chr8	18273947	G-A	Homo	INTERGENIC
SBS	Chr8	27849641	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g44240
SBS	Chr8	4976180	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g08600
SBS	Chr9	3590549	T-C	HET	INTRON

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	587265	587323	58
Deletion	Chr2	738728	738729	1
Deletion	Chr2	3630309	3630880	571	LOC_Os02g07070
Deletion	Chr4	5827841	5827849	8
Deletion	Chr11	7235867	7235891	24
Deletion	Chr5	10142531	10142547	16	LOC_Os05g17630
Deletion	Chr3	12559892	12559893	1
Deletion	Chr2	13017647	13017649	2
Deletion	Chr3	14406821	14406845	24
Deletion	Chr7	14994299	14994301	2
Deletion	Chr5	15291515	15291516	1	LOC_Os05g26290
Deletion	Chr9	15476626	15476646	20
Deletion	Chr8	16682241	16682256	15
Deletion	Chr5	17371174	17371176	2
Deletion	Chr8	20224195	20224196	1
Deletion	Chr6	20962290	20962291	1
Deletion	Chr9	22523811	22523816	5
Deletion	Chr11	24028847	24028861	14	LOC_Os11g40300
Deletion	Chr6	25090834	25090835	1
Deletion	Chr11	25292845	25292846	1
Deletion	Chr8	26572204	26572207	3	LOC_Os08g42080
Deletion	Chr6	27060331	27060345	14	LOC_Os06g44790
Deletion	Chr1	28173678	28173679	1
Deletion	Chr3	31582364	31582366	2
Deletion	Chr3	34176512	34176519	7	LOC_Os03g60100

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	10763644	10763644	1
Insertion	Chr10	2478011	2478047	37
Insertion	Chr11	8388937	8388937	1
Insertion	Chr2	4931599	4931599	1
Insertion	Chr2	6146231	6146232	2	LOC_Os02g11859
Insertion	Chr7	27895935	27895961	27
Insertion	Chr7	28875945	28875945	1
Insertion	Chr9	9495466	9495467	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	22873883	23753384
Inversion	Chr4	22877268	23753386

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1863460	Chr2	16489487	2
Translocation	Chr10	16807700	Chr2	3630310	2
Translocation	Chr10	16807709	Chr1	18634626	2

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