Search Nipponbare

Mutant Information

Mutant Name	FN1427-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1427-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1815428	T-C	HOMO	INTERGENIC
SBS	Chr1	37615119	T-C	HET	INTERGENIC
SBS	Chr10	12608016	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24560
SBS	Chr10	6025997	C-G	HOMO	INTRON
SBS	Chr11	17692929	G-A	HOMO	INTERGENIC
SBS	Chr11	20306897	T-C	HET	INTRON
SBS	Chr11	21693739	G-A	HET	INTERGENIC
SBS	Chr11	26543839	T-C	HET	INTRON
SBS	Chr12	26095744	T-C	HOMO	UTR_3_PRIME
SBS	Chr2	12146797	T-A	HOMO	INTRON
SBS	Chr2	15000530	A-T	HET	INTERGENIC
SBS	Chr2	31095692	A-T	HOMO	INTERGENIC
SBS	Chr2	3616419	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g07050
SBS	Chr3	18844208	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g32960
SBS	Chr3	20269792	T-A	HOMO	INTERGENIC
SBS	Chr3	27608333	T-A	HET	INTERGENIC
SBS	Chr3	9206734	G-T	HET	INTERGENIC
SBS	Chr4	24625948	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	8171740	A-T	HET	INTERGENIC
SBS	Chr5	11184059	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g19250
SBS	Chr6	10367951	G-T	HET	INTRON
SBS	Chr6	10367952	A-G	HET	INTRON
SBS	Chr6	10368176	T-C	HET	INTRON
SBS	Chr6	28526518	C-T	HET	INTERGENIC
SBS	Chr7	14029344	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g24660
SBS	Chr7	17966317	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g30360
SBS	Chr8	12495421	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g20820
SBS	Chr8	17580535	C-G	HET	INTERGENIC
SBS	Chr9	2966624	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g06320
SBS	Chr9	2992485	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g06360
SBS	Chr9	3381797	T-A	HET	INTERGENIC
SBS	Chr9	4037892	T-G	HOMO	SYNONYMOUS_CODING

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1303950	1303963	13
Deletion	Chr1	1564742	1564744	2	LOC_Os01g03740
Deletion	Chr9	2968655	2968660	5
Deletion	Chr11	3153789	3153792	3
Deletion	Chr9	4447701	4447707	6
Deletion	Chr8	5267586	5271587	4001	LOC_Os08g09100
Deletion	Chr5	6634016	6634030	14
Deletion	Chr3	6926758	6926763	5
Deletion	Chr7	7685970	7686000	30
Deletion	Chr11	8963215	8963219	4
Deletion	Chr9	9823919	9823938	19
Deletion	Chr8	10553313	10553318	5
Deletion	Chr10	11051085	11051337	252
Deletion	Chr12	11602410	11602414	4
Deletion	Chr4	12990681	12990683	2
Deletion	Chr3	14576850	14576852	2
Deletion	Chr2	15772479	15772480	1
Deletion	Chr11	16138029	16138038	9
Deletion	Chr3	18539767	18539768	1	LOC_Os03g32420
Deletion	Chr8	19820347	19820354	7
Deletion	Chr2	20787325	20787335	10
Deletion	Chr3	21169076	21169086	10
Deletion	Chr3	21169082	21169092	10
Deletion	Chr6	21318003	21318009	6
Deletion	Chr1	24730909	24730911	2
Deletion	Chr8	25049345	25049348	3
Deletion	Chr12	25184783	25184786	3	LOC_Os12g40680
Deletion	Chr2	28095311	28095321	10
Deletion	Chr1	28108628	28108641	13
Deletion	Chr5	28352599	28352603	4
Deletion	Chr1	34618317	34618335	18	LOC_Os01g59850
Deletion	Chr4	34980745	34980764	19	LOC_Os04g58810
Deletion	Chr1	37000470	37000471	1
Deletion	Chr1	42803379	42803390	11

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	14032262	14032262	1
Insertion	Chr3	2470065	2470066	2
Insertion	Chr7	28750318	28750319	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	6963797	7558051	LOC_Os10g13914
Inversion	Chr11	14553782	21904033
Inversion	Chr3	31343894	31966086	LOC_Os03g56110

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2607100	Chr6	15332608	LOC_Os10g05270
Translocation	Chr9	6097346	Chr8	5267590

Main menu