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Mutant Information

Mutant Name	FN1430-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1430-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12876381	G-T	HET	INTRON
SBS	Chr1	182401	C-T	HOMO	INTERGENIC
SBS	Chr1	38233378	A-G	HET	INTRON
SBS	Chr1	40763175	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g70360
SBS	Chr10	21269311	A-T	HET	INTERGENIC
SBS	Chr10	2240093	A-T	HET	INTRON
SBS	Chr10	630628	C-A	HET	INTERGENIC
SBS	Chr11	16255082	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr11	17268542	A-G	HET	INTERGENIC
SBS	Chr11	26987705	T-G	HET	INTERGENIC
SBS	Chr11	28141436	G-C	HET	INTERGENIC
SBS	Chr11	7391556	G-T	HET	INTERGENIC
SBS	Chr12	10844427	G-A	HET	INTERGENIC
SBS	Chr12	11888574	G-C	HET	INTERGENIC
SBS	Chr12	13294485	G-A	HET	INTERGENIC
SBS	Chr12	14368391	C-G	HET	INTRON
SBS	Chr12	19447421	T-A	HOMO	INTERGENIC
SBS	Chr12	27268283	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr12	9381659	C-A	HET	INTERGENIC
SBS	Chr2	23962042	C-T	HET	INTERGENIC
SBS	Chr2	25539194	A-G	HET	INTERGENIC
SBS	Chr2	28461079	C-T	HET	INTRON
SBS	Chr3	22843833	C-A	HOMO	INTERGENIC
SBS	Chr3	25610973	G-T	HET	INTERGENIC
SBS	Chr3	33122697	C-T	HOMO	INTERGENIC
SBS	Chr3	35891990	T-A	HOMO	INTRON
SBS	Chr3	36114674	G-A	HOMO	INTRON
SBS	Chr4	2252664	A-T	HET	INTERGENIC
SBS	Chr4	7606734	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g13630
SBS	Chr5	10585579	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g18370
SBS	Chr6	1987874	G-A	HOMO	INTRON
SBS	Chr7	10608673	C-T	HOMO	INTERGENIC
SBS	Chr7	2307147	A-T	HET	UTR_5_PRIME
SBS	Chr7	2750554	T-A	HET	INTERGENIC
SBS	Chr8	1157425	A-T	HET	INTERGENIC
SBS	Chr8	1361376	G-A	HET	INTERGENIC
SBS	Chr8	22028049	G-A	HET	INTERGENIC
SBS	Chr8	3804896	G-A	HOMO	INTERGENIC
SBS	Chr8	6390334	C-T	HOMO	INTRON

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	735815	735816	1
Deletion	Chr6	3416101	3416108	7	LOC_Os06g07130
Deletion	Chr7	3643476	3643477	1
Deletion	Chr8	3941103	3941104	1
Deletion	Chr11	4208263	4208267	4	LOC_Os11g08060
Deletion	Chr6	5791938	5791965	27	LOC_Os06g11050
Deletion	Chr12	7365042	7365043	1	LOC_Os12g13230
Deletion	Chr8	7384957	7384974	17
Deletion	Chr12	9583020	9583027	7
Deletion	Chr9	9777390	9777391	1
Deletion	Chr9	10517616	10517625	9
Deletion	Chr9	16408229	16408230	1
Deletion	Chr8	17255151	17255158	7
Deletion	Chr3	17279552	17279565	13
Deletion	Chr8	19419900	19419910	10
Deletion	Chr4	23530336	23530347	11
Deletion	Chr4	24129380	24129395	15
Deletion	Chr1	25527805	25527807	2
Deletion	Chr6	26635069	26635080	11
Deletion	Chr4	27322918	27322928	10	LOC_Os04g46100
Deletion	Chr5	28638904	28638909	5
Deletion	Chr5	29472664	29472666	2
Deletion	Chr3	36114653	36114666	13
Deletion	Chr1	38079538	38079549	11
Deletion	Chr1	42795279	42795307	28

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	21247354	21247357	4
Insertion	Chr2	18298484	18298489	6
Insertion	Chr3	24385373	24385376	4
Insertion	Chr3	28466294	28466295	2
Insertion	Chr7	12555072	12555073	2
Insertion	Chr8	10173562	10173563	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	3734283	3795654	LOC_Os07g07500
Inversion	Chr7	3748967	3795659	LOC_Os07g07520
Inversion	Chr3	11707145	11875810	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	9527620	Chr6	25514514
Translocation	Chr10	23044590	Chr7	3734287	LOC_Os07g07500
Translocation	Chr10	23044592	Chr7	3749010	LOC_Os07g07520

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