Search Results
Mutant Information |
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Mutant Name | FN1431-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN1431-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 24
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
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SBS | Chr1 | 16943538 | G-C | HET | INTERGENIC | |
SBS | Chr1 | 32717659 | G-C | HOMO | INTERGENIC | |
SBS | Chr2 | 22522475 | A-G | HET | INTERGENIC | |
SBS | Chr2 | 31011395 | T-G | HET | INTRON | |
SBS | Chr3 | 14701676 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g25690 |
SBS | Chr3 | 22842297 | G-A | HET | INTERGENIC | |
SBS | Chr3 | 34169519 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g60090 |
SBS | Chr4 | 8774484 | C-T | HOMO | INTERGENIC | |
SBS | Chr5 | 6880452 | C-T | HOMO | INTRON | |
SBS | Chr5 | 8682263 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g15320 |
SBS | Chr5 | 29450231 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os05g51350 |
SBS | Chr6 | 11168773 | T-C | HOMO | INTERGENIC | |
SBS | Chr6 | 16906828 | G-A | HET | INTERGENIC | |
SBS | Chr7 | 8716231 | A-G | HOMO | INTERGENIC | |
SBS | Chr7 | 15294138 | C-T | HOMO | SYNONYMOUS_CODING | |
SBS | Chr7 | 28706966 | T-A | HOMO | INTERGENIC | |
SBS | Chr7 | 29063964 | G-T | HOMO | INTERGENIC | |
SBS | Chr8 | 11614336 | C-T | HET | INTRON | |
SBS | Chr8 | 12292570 | T-G | HET | INTRON | |
SBS | Chr8 | 25050612 | T-A | HET | INTERGENIC | |
SBS | Chr10 | 3169855 | G-T | HET | INTERGENIC | |
SBS | Chr10 | 6885781 | A-G | HET | INTERGENIC | |
SBS | Chr12 | 24851342 | T-C | HET | INTERGENIC | |
SBS | Chr12 | 26455980 | T-C | HET | INTRON |
Deletions: 21
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
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Deletion | Chr10 | 3370852 | 3370856 | 4 | |
Deletion | Chr3 | 3526905 | 3526906 | 1 | |
Deletion | Chr10 | 5696985 | 5696986 | 1 | LOC_Os10g10360 |
Deletion | Chr10 | 5879804 | 5879805 | 1 | |
Deletion | Chr11 | 7264809 | 7264812 | 3 | |
Deletion | Chr1 | 10098199 | 10098202 | 3 | |
Deletion | Chr8 | 10574036 | 10574051 | 15 | |
Deletion | Chr11 | 11219653 | 11219655 | 2 | |
Deletion | Chr3 | 11300768 | 11300770 | 2 | |
Deletion | Chr1 | 13709164 | 13709169 | 5 | |
Deletion | Chr7 | 14289000 | 14289004 | 4 | |
Deletion | Chr7 | 14318303 | 14318304 | 1 | |
Deletion | Chr1 | 15006549 | 15006550 | 1 | |
Deletion | Chr5 | 18786033 | 18786034 | 1 | |
Deletion | Chr2 | 23484531 | 23486995 | 2464 | LOC_Os02g38840 |
Deletion | Chr8 | 24785338 | 24785345 | 7 | LOC_Os08g39240 |
Deletion | Chr5 | 24853931 | 24853932 | 1 | |
Deletion | Chr12 | 25110080 | 25110103 | 23 | |
Deletion | Chr4 | 26429260 | 26429262 | 2 | |
Deletion | Chr2 | 27109095 | 27141232 | 32137 | 8 |
Deletion | Chr8 | 27539442 | 27539454 | 12 |
Insertions: 8
No Inversion
No Translocation