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Mutant Information

Mutant Name	FN1431-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1431-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16943538	G-C	HET	INTERGENIC
SBS	Chr1	32717659	G-C	HOMO	INTERGENIC
SBS	Chr10	3169855	G-T	HET	INTERGENIC
SBS	Chr10	6885781	A-G	HET	INTERGENIC
SBS	Chr12	24851342	T-C	HET	INTERGENIC
SBS	Chr12	26455980	T-C	HET	INTRON
SBS	Chr2	22522475	A-G	HET	INTERGENIC
SBS	Chr2	31011395	T-G	HET	INTRON
SBS	Chr3	14701676	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g25690
SBS	Chr3	22842297	G-A	HET	INTERGENIC
SBS	Chr3	34169519	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g60090
SBS	Chr4	8774484	C-T	HOMO	INTERGENIC
SBS	Chr5	29450231	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g51350
SBS	Chr5	6880452	C-T	HOMO	INTRON
SBS	Chr5	8682263	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g15320
SBS	Chr6	11168773	T-C	HOMO	INTERGENIC
SBS	Chr6	16906828	G-A	HET	INTERGENIC
SBS	Chr7	15294138	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr7	28706966	T-A	HOMO	INTERGENIC
SBS	Chr7	29063964	G-T	HOMO	INTERGENIC
SBS	Chr7	8716231	A-G	HOMO	INTERGENIC
SBS	Chr8	11614336	C-T	HET	INTRON
SBS	Chr8	12292570	T-G	HET	INTRON
SBS	Chr8	25050612	T-A	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3370852	3370856	4
Deletion	Chr3	3526905	3526906	1
Deletion	Chr10	5696985	5696986	1	LOC_Os10g10360
Deletion	Chr10	5879804	5879805	1
Deletion	Chr11	7264809	7264812	3
Deletion	Chr1	10098199	10098202	3
Deletion	Chr8	10574036	10574051	15
Deletion	Chr11	11219653	11219655	2
Deletion	Chr3	11300768	11300770	2
Deletion	Chr1	13709164	13709169	5
Deletion	Chr7	14289000	14289004	4
Deletion	Chr7	14318303	14318304	1
Deletion	Chr1	15006549	15006550	1
Deletion	Chr5	18786033	18786034	1
Deletion	Chr2	23484531	23486995	2464	LOC_Os02g38840
Deletion	Chr8	24785338	24785345	7	LOC_Os08g39240
Deletion	Chr5	24853931	24853932	1
Deletion	Chr12	25110080	25110103	23
Deletion	Chr4	26429260	26429262	2
Deletion	Chr2	27109095	27141232	32137	8
Deletion	Chr8	27539442	27539454	12

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	9239605	9239605	1
Insertion	Chr2	35603883	35603884	2
Insertion	Chr3	16643712	16643712	1
Insertion	Chr6	30141354	30141354	1
Insertion	Chr6	7465993	7465996	4
Insertion	Chr7	14997605	14997605	1
Insertion	Chr8	5484952	5484952	1
Insertion	Chr9	5020072	5020073	2

No Inversion

No Translocation

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