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Mutant Information

Mutant Name	FN1433-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1433-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect
SBS	Chr1	4903793	A-T	HET	INTERGENIC
SBS	Chr2	11658179	T-A	HET	INTERGENIC
SBS	Chr2	18394737	A-T	HET	INTERGENIC
SBS	Chr3	6506478	C-T	HOMO	INTERGENIC
SBS	Chr3	10591478	G-T	HOMO	UTR_3_PRIME
SBS	Chr3	10719499	A-T	HET	INTERGENIC
SBS	Chr3	16260535	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	32838394	G-A	HET	INTRON
SBS	Chr5	815971	T-C	HET	INTERGENIC
SBS	Chr5	815979	T-C	HET	INTERGENIC
SBS	Chr5	14554857	C-G	HET	INTERGENIC
SBS	Chr5	17100762	G-A	HET	INTERGENIC
SBS	Chr5	25243184	C-G	HOMO	SYNONYMOUS_CODING
SBS	Chr6	12239577	T-A	HOMO	INTRON
SBS	Chr6	12239578	C-A	HOMO	INTRON
SBS	Chr6	21893671	A-G	HET	INTRON
SBS	Chr6	23094866	T-C	HET	SYNONYMOUS_CODING
SBS	Chr7	11048634	C-T	HET	INTERGENIC
SBS	Chr7	11048637	G-A	HET	INTERGENIC
SBS	Chr7	11048638	G-T	HET	INTERGENIC
SBS	Chr7	18138939	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	15560136	T-C	HET	INTERGENIC
SBS	Chr10	14044873	A-T	HET	INTERGENIC
SBS	Chr11	5573091	A-G	HOMO	INTRON
SBS	Chr11	13877953	G-A	HET	INTERGENIC
SBS	Chr11	18746024	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	18856777	T-C	HET	INTERGENIC
SBS	Chr12	18053197	G-T	HET	INTERGENIC
SBS	Chr12	19324841	A-T	HET	INTERGENIC

Deletions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	896613	896615	2
Deletion	Chr10	3382290	3382291	1
Deletion	Chr1	3473618	3473626	8
Deletion	Chr7	3798393	3798404	11	LOC_Os07g07580
Deletion	Chr12	4662517	4662518	1
Deletion	Chr2	6716242	6716253	11
Deletion	Chr5	7908379	7908380	1
Deletion	Chr8	9164003	9164011	8
Deletion	Chr7	9423356	9423359	3
Deletion	Chr6	10128471	10128473	2
Deletion	Chr7	11048081	11048083	2
Deletion	Chr8	11713806	11713808	2
Deletion	Chr6	13233037	13233046	9	LOC_Os06g22750
Deletion	Chr2	14048388	14048413	25
Deletion	Chr5	14945584	14945585	1
Deletion	Chr10	15391001	15953000	562000	93
Deletion	Chr12	15850497	15850501	4
Deletion	Chr10	15966001	16428000	462000	53
Deletion	Chr1	16141241	16141246	5
Deletion	Chr9	18231365	18231405	40
Deletion	Chr7	18706824	18706828	4
Deletion	Chr8	22208251	22208252	1
Deletion	Chr3	22324152	22324173	21
Deletion	Chr12	23337366	23337373	7
Deletion	Chr3	24102076	24102106	30	LOC_Os03g43220
Deletion	Chr5	24531774	24531779	5
Deletion	Chr12	25476006	25476051	45
Deletion	Chr4	26588382	26588383	1	LOC_Os04g44930
Deletion	Chr4	26962594	26962604	10	LOC_Os04g45580
Deletion	Chr2	27141001	27209000	68000	9
Deletion	Chr4	27537352	27537354	2
Deletion	Chr1	27786411	27786422	11
Deletion	Chr7	27936990	27936993	3	LOC_Os07g46740
Deletion	Chr3	28744747	28744762	15	LOC_Os03g50364
Deletion	Chr5	29175523	29175533	10	LOC_Os05g50860
Deletion	Chr2	29856665	29856668	3
Deletion	Chr3	36223211	36223216	5
Deletion	Chr1	40857059	40857069	10	LOC_Os01g70540
Deletion	Chr1	43017202	43017207	5	LOC_Os01g74250

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	10541808	10541828	21	LOC_Os04g18980
Insertion	Chr4	29415694	29415694	1
Insertion	Chr6	21372446	21372451	6	LOC_Os06g36390
Insertion	Chr11	28474874	28474875	2

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	13699044	Chr1	2503819
Translocation	Chr7	21189217	Chr4	13727662

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