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Mutant Information

Mutant Name	FN1434-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1434-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10359493	G-A	HET	INTERGENIC
SBS	Chr1	10946097	C-A	HET	INTERGENIC
SBS	Chr1	2665738	C-A	HOMO	INTRON
SBS	Chr1	30679520	T-C	HOMO	INTERGENIC
SBS	Chr1	40476969	G-A	HOMO	INTERGENIC
SBS	Chr1	5995376	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g11190
SBS	Chr10	3623822	A-G	HET	INTERGENIC
SBS	Chr10	5306985	C-G	HET	INTRON
SBS	Chr10	66899	A-G	HOMO	INTERGENIC
SBS	Chr11	14008083	G-A	HET	INTERGENIC
SBS	Chr11	14008084	G-A	HET	INTERGENIC
SBS	Chr11	14734318	G-A	HET	INTRON
SBS	Chr11	17365260	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g29890
SBS	Chr11	7587452	G-A	HOMO	START_GAINED	LOC_Os11g13800
SBS	Chr12	14854108	A-C	HOMO	INTERGENIC
SBS	Chr12	17565452	A-G	HOMO	INTERGENIC
SBS	Chr2	34794222	A-T	HOMO	INTERGENIC
SBS	Chr3	25981896	G-A	HET	INTRON
SBS	Chr3	25981897	A-C	HET	INTRON
SBS	Chr4	29586939	G-A	HOMO	INTERGENIC
SBS	Chr4	4051905	T-C	HET	INTERGENIC
SBS	Chr5	10875411	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g18760
SBS	Chr5	12156864	C-T	HET	INTRON
SBS	Chr5	9268416	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g16370
SBS	Chr5	9821212	G-T	HET	INTERGENIC
SBS	Chr6	22992559	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g38730
SBS	Chr6	24193175	T-C	HET	INTERGENIC
SBS	Chr6	27400655	A-T	HET	INTERGENIC
SBS	Chr6	6131257	T-A	HET	INTERGENIC
SBS	Chr7	22219296	T-A	HET	INTERGENIC
SBS	Chr8	15269896	G-A	HET	INTERGENIC
SBS	Chr8	15403294	C-T	HET	INTERGENIC
SBS	Chr8	3910650	T-A	HOMO	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	593799	593800	1
Deletion	Chr8	897969	897974	5
Deletion	Chr7	1979429	1979431	2	LOC_Os07g04480
Deletion	Chr1	2835915	2835922	7
Deletion	Chr8	2986203	2986208	5
Deletion	Chr10	3719098	3719102	4
Deletion	Chr11	11587438	11587453	15
Deletion	Chr10	15858413	15858416	3
Deletion	Chr3	17247729	17247730	1
Deletion	Chr6	18121443	18121444	1
Deletion	Chr6	19850157	19850163	6
Deletion	Chr1	20325502	20325525	23	LOC_Os01g36630
Deletion	Chr10	21292561	21292573	12
Deletion	Chr6	23034553	23034554	1
Deletion	Chr7	24144354	24144355	1
Deletion	Chr6	27595883	27595884	1
Deletion	Chr3	28541653	28541654	1
Deletion	Chr2	34794814	34794823	9

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	9349145	9349146	2
Insertion	Chr8	16212030	16212031	2

No Inversion

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	728453	Chr7	22357991
Translocation	Chr11	2078889	Chr5	9819865	LOC_Os11g04890
Translocation	Chr11	2078896	Chr5	9819893	LOC_Os11g04890
Translocation	Chr12	21654187	Chr3	34394815	LOC_Os03g60509

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