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Mutant Information

Mutant Name	FN1435-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1435-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4646379	C-T	HOMO	INTERGENIC
SBS	Chr11	17896267	T-A	HET	INTERGENIC
SBS	Chr11	3730657	C-T	HET	INTERGENIC
SBS	Chr12	10258420	C-T	HET	INTRON
SBS	Chr12	12563046	G-A	HET	INTERGENIC
SBS	Chr12	26203000	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g42230
SBS	Chr12	26638754	A-G	HOMO	INTRON
SBS	Chr2	10365641	T-C	HET	INTERGENIC
SBS	Chr2	13587366	A-G	HET	INTRON
SBS	Chr2	26855381	T-C	HET	INTERGENIC
SBS	Chr2	27396825	C-T	HET	INTERGENIC
SBS	Chr2	27791562	C-T	HET	INTRON
SBS	Chr3	2428373	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g05010
SBS	Chr3	24432273	T-C	HET	INTRON
SBS	Chr4	27543579	A-G	HET	INTERGENIC
SBS	Chr5	19780691	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	19780692	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g33630
SBS	Chr5	22491800	G-A	HOMO	UTR_3_PRIME
SBS	Chr5	27264508	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g47590
SBS	Chr6	14926255	C-T	HET	INTERGENIC
SBS	Chr6	2119994	G-T	HET	INTERGENIC
SBS	Chr6	7985	G-A	HET	INTERGENIC
SBS	Chr6	8791176	A-G	HET	INTERGENIC
SBS	Chr6	9448335	C-T	HET	INTERGENIC
SBS	Chr7	15976466	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g27420
SBS	Chr7	26050079	C-T	HET	INTERGENIC
SBS	Chr7	2823943	C-T	HET	INTERGENIC
SBS	Chr7	795231	G-A	HET	INTERGENIC
SBS	Chr8	14667156	T-C	HOMO	INTERGENIC
SBS	Chr8	5194750	G-A	HOMO	INTERGENIC
SBS	Chr9	11499875	T-C	HET	INTRON
SBS	Chr9	3866529	G-A	HOMO	INTERGENIC
SBS	Chr9	7638833	C-T	HOMO	INTERGENIC
SBS	Chr9	8026191	G-A	HET	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	822581	822603	22	LOC_Os09g02140
Deletion	Chr5	1874944	1875026	82
Deletion	Chr3	2070942	2070945	3
Deletion	Chr3	2830184	2830186	2
Deletion	Chr2	3511115	3511144	29
Deletion	Chr1	3817334	3817342	8
Deletion	Chr3	4613683	4613695	12
Deletion	Chr9	5322521	5322522	1	LOC_Os09g09820
Deletion	Chr7	6959405	6959406	1	LOC_Os07g12330
Deletion	Chr2	8386450	8401663	15213	5
Deletion	Chr11	8953756	8953820	64
Deletion	Chr1	9118162	9118167	5	LOC_Os01g16152
Deletion	Chr7	10578806	10578807	1
Deletion	Chr1	11098724	11098731	7
Deletion	Chr10	13664885	13664888	3
Deletion	Chr11	15263052	15263053	1
Deletion	Chr10	17819501	17819502	1
Deletion	Chr12	18262907	18262908	1
Deletion	Chr5	21933636	21933639	3
Deletion	Chr4	23834300	23834330	30
Deletion	Chr8	24734021	24734027	6	LOC_Os08g39160
Deletion	Chr1	25997410	25997413	3
Deletion	Chr2	26234643	26234665	22	LOC_Os02g43460
Deletion	Chr12	26638757	26638768	11
Deletion	Chr1	27674971	27674976	5
Deletion	Chr5	29192961	29192974	13

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	15086796	15086797	2
Insertion	Chr3	25891065	25891068	4
Insertion	Chr7	12108498	12108500	3

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	4458791	4461124
Inversion	Chr11	4729152	5651150	LOC_Os11g10410
Inversion	Chr11	4729165	5651169	LOC_Os11g10410
Inversion	Chr11	20751817	21578280	LOC_Os11g35410
Inversion	Chr2	27277087	27917565

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	10408739	Chr4	17874145
Translocation	Chr11	16401942	Chr1	6309094
Translocation	Chr11	16402202	Chr1	6309004
Translocation	Chr12	21600405	Chr6	14545839
Translocation	Chr12	24576978	Chr2	13582794	LOC_Os02g22800
Translocation	Chr12	24577004	Chr2	13587276	LOC_Os02g22800
Translocation	Chr12	24577005	Chr2	13587199	LOC_Os02g22800
Translocation	Chr5	28448968	Chr1	30432481	LOC_Os05g49590

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