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Mutant Information

Mutant Name	FN1436-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1436-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Very Low (Below 24%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30037773	A-C	HOMO	INTRON
SBS	Chr1	40160053	C-A	HET	INTERGENIC
SBS	Chr2	4475746	G-A	HET	INTERGENIC
SBS	Chr2	9361043	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g16420
SBS	Chr2	18982124	T-A	HET	INTRON
SBS	Chr2	27848966	C-T	HET	INTERGENIC
SBS	Chr3	2086736	C-G	HOMO	INTERGENIC
SBS	Chr3	24097495	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g43210
SBS	Chr4	3088287	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g05960
SBS	Chr4	21845347	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g35840
SBS	Chr4	34847074	T-C	HOMO	INTERGENIC
SBS	Chr4	35220697	C-A	HOMO	INTERGENIC
SBS	Chr5	6689003	C-T	HET	INTRON
SBS	Chr5	9294840	G-T	HET	INTERGENIC
SBS	Chr6	20522992	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr7	6727658	G-A	HOMO	INTERGENIC
SBS	Chr7	6727660	G-A	HOMO	INTERGENIC
SBS	Chr7	6727664	G-T	HOMO	INTERGENIC
SBS	Chr7	9677332	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g16510
SBS	Chr7	21009361	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	1574854	A-G	HET	INTERGENIC
SBS	Chr8	9370513	G-A	HET	STOP_GAINED	LOC_Os08g15400
SBS	Chr8	22057380	A-G	HET	INTRON
SBS	Chr8	22158886	C-A	HET	INTERGENIC
SBS	Chr8	22158887	C-A	HET	INTERGENIC
SBS	Chr9	6039314	G-T	HOMO	INTRON
SBS	Chr9	6871123	G-C	HET	INTERGENIC
SBS	Chr9	9805028	G-C	HET	INTERGENIC
SBS	Chr10	17480335	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g33275
SBS	Chr11	5579410	C-A	HET	INTERGENIC
SBS	Chr11	13811979	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g24240
SBS	Chr11	16304263	C-A	HET	INTERGENIC
SBS	Chr11	20630650	A-T	HET	INTERGENIC
SBS	Chr11	27156059	G-A	HET	INTRON
SBS	Chr12	20210761	C-T	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1371325	1371326	1
Deletion	Chr3	5268967	5268993	26
Deletion	Chr2	5416097	5416099	2
Deletion	Chr10	5797407	5797412	5
Deletion	Chr2	8206644	8206649	5
Deletion	Chr2	9192600	9192601	1
Deletion	Chr10	14751546	14751547	1
Deletion	Chr5	15218966	15218968	2
Deletion	Chr7	22667162	22667171	9
Deletion	Chr3	23651224	23651227	3	LOC_Os03g42510
Deletion	Chr2	24875841	24875844	3
Deletion	Chr12	25042181	25042194	13
Deletion	Chr3	25973077	25973078	1	LOC_Os03g45960
Deletion	Chr6	26641128	26641138	10
Deletion	Chr5	27711283	27711289	6
Deletion	Chr6	27883123	27883126	3
Deletion	Chr2	33736298	33736299	1
Deletion	Chr4	34847082	34847086	4
Deletion	Chr1	41853318	41853323	5
Deletion	Chr1	42223044	42223049	5	LOC_Os01g72780

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	22800889	22800889	1
Insertion	Chr10	19812345	19812345	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	18899139	19144999	LOC_Os02g31970

No Translocation

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