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Mutant Information

Mutant Name	FN1438-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1438-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10818765	T-A	HOMO	INTERGENIC
SBS	Chr1	27906078	G-A	HET	INTERGENIC
SBS	Chr1	39862620	C-T	HET	INTRON
SBS	Chr2	7786679	C-T	HET	INTRON
SBS	Chr3	1798736	T-C	HET	UTR_3_PRIME
SBS	Chr3	27704366	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	2099783	C-A	HET	SYNONYMOUS_CODING
SBS	Chr4	7226392	C-A	HET	INTERGENIC
SBS	Chr4	9359976	A-G	HET	INTERGENIC
SBS	Chr4	16936020	A-C	HET	INTERGENIC
SBS	Chr4	28261886	T-G	HOMO	INTERGENIC
SBS	Chr4	28261910	G-A	HOMO	INTERGENIC
SBS	Chr5	20591241	T-A	HET	INTERGENIC
SBS	Chr5	24497508	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	25676760	C-T	HOMO	INTERGENIC
SBS	Chr6	25987942	A-T	HET	INTERGENIC
SBS	Chr6	25987943	T-C	HET	INTERGENIC
SBS	Chr6	29486932	G-A	HET	INTERGENIC
SBS	Chr6	31210070	T-A	HET	INTRON
SBS	Chr7	2547471	G-A	HET	INTERGENIC
SBS	Chr7	2547472	C-A	HET	INTERGENIC
SBS	Chr7	3035356	C-T	HET	INTERGENIC
SBS	Chr7	4630759	C-T	HET	STOP_GAINED	LOC_Os07g08900
SBS	Chr7	14735549	G-A	HET	INTERGENIC
SBS	Chr7	15553849	T-A	HOMO	INTERGENIC
SBS	Chr8	3759235	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g06700
SBS	Chr8	6570695	T-G	HET	INTRON
SBS	Chr8	23188055	G-C	HET	INTERGENIC
SBS	Chr9	3096957	C-T	HET	STOP_GAINED	LOC_Os09g06520
SBS	Chr9	17425455	T-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	17718659	A-G	HET	INTERGENIC
SBS	Chr9	18060472	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g29700
SBS	Chr10	6996656	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g12570
SBS	Chr10	17176694	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g32800
SBS	Chr10	20523759	C-T	HET	INTERGENIC
SBS	Chr11	1354639	C-T	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	252032	252034	2	LOC_Os06g01420
Deletion	Chr9	1108975	1108976	1
Deletion	Chr9	1528161	1528162	1	LOC_Os09g03180
Deletion	Chr9	2083017	2083018	1
Deletion	Chr6	3132226	3132227	1	LOC_Os06g06670
Deletion	Chr8	3418549	3418688	139
Deletion	Chr6	3683418	3683419	1
Deletion	Chr5	4624642	4624643	1
Deletion	Chr6	5160073	5160074	1
Deletion	Chr6	6665112	6665286	174
Deletion	Chr6	7083214	7083231	17
Deletion	Chr4	7684398	7684400	2
Deletion	Chr3	11954178	11954179	1
Deletion	Chr5	19753249	19753279	30
Deletion	Chr3	21154135	21154144	9
Deletion	Chr10	21543517	21543521	4
Deletion	Chr12	21597035	21597038	3
Deletion	Chr12	26418032	26418037	5	LOC_Os12g42520
Deletion	Chr3	26818253	26818259	6
Deletion	Chr4	29196311	29196312	1	LOC_Os04g48950
Deletion	Chr4	31435706	31435721	15	LOC_Os04g52800
Deletion	Chr4	31690794	31690795	1
Deletion	Chr3	32126714	32126728	14
Deletion	Chr2	33419553	33419567	14
Deletion	Chr3	35718082	35718086	4

No Insertion

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	24746994	Chr3	27526894	2

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