Search Nipponbare

Mutant Information

Mutant Name	FN1440-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1440-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22492453	G-T	HET	INTERGENIC
SBS	Chr1	31799305	T-G	HOMO	INTERGENIC
SBS	Chr1	36296449	A-T	HOMO	INTRON
SBS	Chr10	1696295	A-T	HET	INTRON
SBS	Chr10	8431463	C-T	HET	INTERGENIC
SBS	Chr11	10377103	G-T	HET	INTERGENIC
SBS	Chr11	23211714	G-A	HET	INTERGENIC
SBS	Chr12	116227	T-A	HET	INTRON
SBS	Chr12	16706539	T-A	HET	UTR_3_PRIME
SBS	Chr12	18349727	A-T	HET	INTERGENIC
SBS	Chr12	21244169	A-T	HOMO	INTERGENIC
SBS	Chr2	13265423	C-G	HET	INTERGENIC
SBS	Chr2	32970450	T-A	HET	INTERGENIC
SBS	Chr3	12705674	C-T	HET	INTRON
SBS	Chr3	23602268	C-A	HET	INTERGENIC
SBS	Chr3	5696964	A-T	HET	INTERGENIC
SBS	Chr4	20301222	T-C	HET	INTERGENIC
SBS	Chr5	13795372	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g23960
SBS	Chr5	23612939	A-T	HET	INTERGENIC
SBS	Chr5	27013296	C-T	HET	INTERGENIC
SBS	Chr5	4496151	G-A	HOMO	INTERGENIC
SBS	Chr5	9877655	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17260
SBS	Chr6	7044408	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g12870
SBS	Chr7	23976478	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g39960
SBS	Chr8	11340104	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g19000
SBS	Chr8	1351532	A-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	16030401	T-C	HET	INTERGENIC
SBS	Chr8	27671527	C-A	HET	UTR_3_PRIME
SBS	Chr8	316294	C-G	HET	INTERGENIC
SBS	Chr9	16005060	C-T	HOMO	INTERGENIC
SBS	Chr9	4167554	C-T	HET	INTRON
SBS	Chr9	6589662	G-A	HET	INTERGENIC
SBS	Chr9	759600	T-A	HET	INTRON

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	540709	540712	3
Deletion	Chr5	923318	923322	4
Deletion	Chr11	1221698	1221705	7
Deletion	Chr10	1626212	1626228	16
Deletion	Chr4	2587260	2587273	13
Deletion	Chr6	2994625	2994636	11
Deletion	Chr3	3994517	4009447	14930	3
Deletion	Chr3	4549450	4550175	725
Deletion	Chr1	5108374	5108382	8
Deletion	Chr5	5269894	5269903	9	LOC_Os05g09380
Deletion	Chr5	10935699	10935715	16
Deletion	Chr10	10965444	10965468	24
Deletion	Chr5	12253823	12253829	6
Deletion	Chr12	12880784	12880785	1
Deletion	Chr7	21433022	21433027	5
Deletion	Chr9	22518536	22518537	1
Deletion	Chr9	22518540	22518541	1
Deletion	Chr4	22556692	22556699	7
Deletion	Chr3	25226661	25226664	3
Deletion	Chr4	26354613	26354620	7
Deletion	Chr5	27987000	27987006	6
Deletion	Chr4	29329271	29329278	7
Deletion	Chr2	33468691	33468692	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	36921330	36921331	2
Insertion	Chr12	3070387	3070388	2
Insertion	Chr12	6749362	6749362	1
Insertion	Chr7	11351622	11351624	3

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	13689707	13754533

No Translocation

Main menu