Search Results

Mutant Information

Mutant Name	FN1441-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1441-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect
SBS	Chr1	1991918	T-C	HET	INTERGENIC
SBS	Chr1	3380478	A-C	HET	INTERGENIC
SBS	Chr1	3380479	C-T	HET	INTERGENIC
SBS	Chr1	3905569	T-A	HET	SYNONYMOUS_CODING
SBS	Chr1	5023484	A-C	HET	INTRON
SBS	Chr1	11542061	A-T	HET	INTERGENIC
SBS	Chr2	2849594	G-A	HOMO	INTERGENIC
SBS	Chr2	28807325	T-A	HET	INTERGENIC
SBS	Chr2	28807326	T-A	HET	INTERGENIC
SBS	Chr2	29899140	T-A	HET	INTERGENIC
SBS	Chr3	11882018	G-T	HET	INTERGENIC
SBS	Chr3	31306954	G-A	HET	INTERGENIC
SBS	Chr4	10697908	A-C	HET	INTERGENIC
SBS	Chr6	4575444	T-A	HOMO	INTERGENIC
SBS	Chr6	14910874	C-A	HET	INTRON
SBS	Chr6	25589539	C-T	HET	INTERGENIC
SBS	Chr7	4583721	T-C	HET	INTERGENIC
SBS	Chr9	11708585	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	9228922	C-T	HET	INTERGENIC
SBS	Chr10	12242054	G-A	HET	INTERGENIC
SBS	Chr10	19199120	G-A	HET	UTR_3_PRIME
SBS	Chr11	8645212	C-A	HOMO	INTERGENIC
SBS	Chr11	15641974	T-A	HOMO	INTRON
SBS	Chr11	17545984	T-G	HET	INTERGENIC
SBS	Chr12	16149129	C-T	HOMO	INTERGENIC
SBS	Chr12	16868641	A-G	HOMO	INTERGENIC
SBS	Chr12	21694389	G-A	HET	INTRON
SBS	Chr12	26458513	T-C	HET	INTRON

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	231394	231395	1
Deletion	Chr1	2587028	2587029	1
Deletion	Chr1	2673270	2673274	4
Deletion	Chr11	3676310	3676314	4
Deletion	Chr5	4293079	4293080	1
Deletion	Chr1	4336495	4336496	1	LOC_Os01g08700
Deletion	Chr6	4642369	4642378	9	LOC_Os06g09230
Deletion	Chr4	6808394	6808395	1	LOC_Os04g12330
Deletion	Chr9	7053253	7053269	16	LOC_Os09g12350
Deletion	Chr2	7484720	7484732	12
Deletion	Chr2	8553147	8553149	2
Deletion	Chr2	9633869	9633870	1
Deletion	Chr10	10148930	10148931	1
Deletion	Chr7	12393768	12393773	5	LOC_Os07g22200
Deletion	Chr7	14519326	14519329	3
Deletion	Chr10	16571013	16587098	16085	2
Deletion	Chr4	16796438	16796439	1
Deletion	Chr10	19193763	19193787	24
Deletion	Chr6	20009658	20009660	2
Deletion	Chr9	21377190	21377199	9
Deletion	Chr6	22195806	22195809	3
Deletion	Chr8	27162671	27162681	10
Deletion	Chr1	27960584	27960598	14	LOC_Os01g48750

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	22610451	22610452	2
Insertion	Chr1	2416145	2416147	3
Insertion	Chr1	2580941	2580944	4
Insertion	Chr1	2961170	2961175	6
Insertion	Chr2	4646560	4646561	2
Insertion	Chr2	12864063	12864066	4
Insertion	Chr9	22283846	22283870	25	LOC_Os09g38777
Insertion	Chr11	7252336	7252337	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	9583495	10141740	LOC_Os02g17620
Inversion	Chr11	17546696	18129932

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	8428042	Chr1	23528727	LOC_Os05g14820
Translocation	Chr8	23686714	Chr7	7748103
Translocation	Chr3	34805468	Chr1	17588548	LOC_Os03g61290

Main menu