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Mutant Information

Mutant Name	FN1445-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1445-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Early (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Very Low (Below 24%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10364975	A-G	HOMO	INTERGENIC
SBS	Chr1	11851160	G-A	HOMO	INTERGENIC
SBS	Chr1	12513187	G-A	HOMO	INTRON
SBS	Chr1	21428496	C-G	HOMO	INTRON
SBS	Chr1	6456067	T-C	HOMO	UTR_3_PRIME
SBS	Chr1	6595368	A-G	HOMO	INTERGENIC
SBS	Chr1	7888829	G-A	HET	INTERGENIC
SBS	Chr11	16069363	G-T	HET	INTERGENIC
SBS	Chr11	26833850	G-C	HET	INTERGENIC
SBS	Chr11	28644341	G-A	HET	STOP_GAINED	LOC_Os11g47445
SBS	Chr11	3547776	T-C	HET	INTERGENIC
SBS	Chr12	11013628	G-A	HET	INTERGENIC
SBS	Chr12	15437905	C-A	HET	INTERGENIC
SBS	Chr2	16019950	T-C	HET	INTERGENIC
SBS	Chr2	16176755	G-A	HET	INTRON
SBS	Chr2	16176756	C-T	HET	INTRON
SBS	Chr2	16176757	C-A	HET	INTRON
SBS	Chr3	3169080	A-T	HET	INTERGENIC
SBS	Chr3	3203178	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g06410
SBS	Chr4	10201204	C-T	HET	INTERGENIC
SBS	Chr4	17297947	C-A	HET	INTRON
SBS	Chr4	17624590	T-A	HOMO	INTERGENIC
SBS	Chr4	21643503	G-C	HET	INTERGENIC
SBS	Chr5	15305393	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	16283922	A-G	HET	INTERGENIC
SBS	Chr5	5348894	C-T	HET	INTERGENIC
SBS	Chr5	7041908	A-G	HET	INTERGENIC
SBS	Chr6	7797539	G-C	HET	INTERGENIC
SBS	Chr7	4395036	T-A	HOMO	INTERGENIC
SBS	Chr8	18399795	C-A	HET	INTRON
SBS	Chr8	6366967	G-C	HET	SYNONYMOUS_CODING

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	2101869	2101870	1
Deletion	Chr4	2913714	2913719	5
Deletion	Chr10	4019757	4019758	1
Deletion	Chr2	4183679	4183680	1
Deletion	Chr5	4984693	4984703	10	LOC_Os05g09000
Deletion	Chr2	6970617	6970621	4
Deletion	Chr1	9018240	9018263	23	LOC_Os01g16020
Deletion	Chr4	9438320	9438334	14
Deletion	Chr1	10893349	10893360	11	LOC_Os01g19260
Deletion	Chr1	14223726	14223730	4
Deletion	Chr12	21697593	21697609	16
Deletion	Chr6	30060426	30060439	13	LOC_Os06g49670
Deletion	Chr3	32550080	32550081	1
Deletion	Chr3	33193549	33193550	1
Deletion	Chr1	39300868	39300873	5

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	18371365	18371366	2
Insertion	Chr2	30117353	30117353	1
Insertion	Chr4	4030819	4030819	1	LOC_Os04g07580
Insertion	Chr5	27863457	27863460	4
Insertion	Chr6	25246934	25246935	2
Insertion	Chr7	4911577	4911578	2
Insertion	Chr7	8456160	8456160	1

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	14068406	Chr4	23938465
Translocation	Chr6	15299009	Chr3	23634614	2
Translocation	Chr6	15314452	Chr3	23634587	LOC_Os03g42480

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