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Mutant Information

Mutant Name	FN1448-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1448-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 51

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25668902	C-A	HET	INTERGENIC
SBS	Chr1	25692914	C-A	HET	INTRON
SBS	Chr1	26901884	C-T	HET	INTERGENIC
SBS	Chr1	31781842	G-T	HET	INTERGENIC
SBS	Chr1	32446477	A-G	HET	INTERGENIC
SBS	Chr2	18415471	A-G	HET	INTERGENIC
SBS	Chr2	30484755	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g49890
SBS	Chr3	17447518	G-A	HET	INTERGENIC
SBS	Chr3	17565820	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g30810
SBS	Chr3	18710991	G-A	HET	INTERGENIC
SBS	Chr3	23666282	C-G	HET	INTRON
SBS	Chr3	24563378	C-A	HET	INTERGENIC
SBS	Chr4	8903060	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g16380
SBS	Chr4	10970459	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g19660
SBS	Chr4	20320235	G-T	HOMO	INTRON
SBS	Chr4	21067445	G-A	HOMO	INTERGENIC
SBS	Chr4	34594860	T-G	HOMO	INTERGENIC
SBS	Chr5	10413133	G-A	HET	INTRON
SBS	Chr6	21274818	T-A	HET	INTERGENIC
SBS	Chr6	26391046	C-T	HET	INTRON
SBS	Chr6	26524001	C-T	HET	INTERGENIC
SBS	Chr6	29885685	C-A	HET	SYNONYMOUS_CODING
SBS	Chr7	3523889	G-A	HET	INTRON
SBS	Chr7	8448530	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g14800
SBS	Chr7	19394143	T-G	HET	INTERGENIC
SBS	Chr7	22798952	G-A	HOMO	UTR_3_PRIME
SBS	Chr7	23436823	C-T	HET	INTRON
SBS	Chr7	28678909	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr8	2557804	T-A	HOMO	INTRON
SBS	Chr8	7168202	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g12170
SBS	Chr8	8558799	A-T	HOMO	INTERGENIC
SBS	Chr8	17977958	G-A	HET	STOP_GAINED	LOC_Os08g29300
SBS	Chr8	18554245	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g30180
SBS	Chr8	22383907	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	4091276	C-T	HOMO	INTRON
SBS	Chr9	5471080	A-G	HET	INTERGENIC
SBS	Chr9	5832400	C-T	HOMO	INTERGENIC
SBS	Chr9	16217871	T-A	HET	INTERGENIC
SBS	Chr10	1589648	G-A	HET	INTRON
SBS	Chr10	10931559	G-A	HET	INTERGENIC
SBS	Chr10	11852717	C-T	HET	INTERGENIC
SBS	Chr10	13721016	G-A	HET	INTERGENIC
SBS	Chr10	17461233	A-T	HET	INTERGENIC
SBS	Chr11	8060660	T-C	HOMO	INTERGENIC
SBS	Chr11	8342691	C-T	HET	INTERGENIC
SBS	Chr11	9909122	C-A	HET	INTERGENIC
SBS	Chr11	14918880	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26080
SBS	Chr11	19196870	A-T	HET	INTERGENIC
SBS	Chr12	16938955	T-C	HOMO	INTERGENIC
SBS	Chr12	23515330	T-C	HET	INTRON
SBS	Chr12	25421512	T-C	HET	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	78894	78907	13
Deletion	Chr2	728886	728892	6	LOC_Os02g02250
Deletion	Chr5	4184431	4184441	10
Deletion	Chr12	4464131	4464134	3
Deletion	Chr3	6762215	6762217	2
Deletion	Chr1	7404681	7404689	8
Deletion	Chr10	8341257	8341269	12
Deletion	Chr11	10381157	10381159	2
Deletion	Chr10	13231873	13231875	2	LOC_Os10g25560
Deletion	Chr9	13605194	13605212	18
Deletion	Chr10	14917489	14917520	31
Deletion	Chr12	23026298	23026304	6
Deletion	Chr8	23818926	23818932	6
Deletion	Chr6	28845728	28845760	32
Deletion	Chr2	30527995	30527996	1
Deletion	Chr6	31029423	31029425	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	4266037	4266038	2
Insertion	Chr7	761162	761162	1	LOC_Os07g02300
Insertion	Chr8	16438848	16438855	8

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	33432888	33684589	LOC_Os01g57800

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	24604183	Chr8	20252392	LOC_Os08g32690

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