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Mutant Information

Mutant Name	FN1450-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1450-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31563020	T-G	HET	INTRON
SBS	Chr10	1652204	A-G	HET	INTERGENIC
SBS	Chr10	18306693	G-A	HET	INTERGENIC
SBS	Chr10	23095729	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g42830
SBS	Chr10	3176816	C-T	HET	INTERGENIC
SBS	Chr11	14046243	C-T	HET	INTERGENIC
SBS	Chr11	20050670	G-A	HET	INTERGENIC
SBS	Chr12	13767444	A-T	HET	INTRON
SBS	Chr12	19488898	T-A	HET	INTRON
SBS	Chr2	12673511	T-C	HET	INTERGENIC
SBS	Chr2	16128118	A-C	Homo	INTERGENIC
SBS	Chr2	20337925	A-G	HET	INTERGENIC
SBS	Chr2	21299431	C-A	HET	INTERGENIC
SBS	Chr2	21338992	G-A	HET	INTERGENIC
SBS	Chr3	4780233	A-G	HET	INTERGENIC
SBS	Chr4	13696780	C-T	Homo	INTERGENIC
SBS	Chr4	20299760	C-T	HET	INTERGENIC
SBS	Chr4	26791299	C-T	HET	INTERGENIC
SBS	Chr5	26224237	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g45170
SBS	Chr5	8386245	G-T	Homo	INTERGENIC
SBS	Chr5	8640067	G-A	HET	INTERGENIC
SBS	Chr8	14070059	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g23310
SBS	Chr8	23642063	A-C	Homo	INTERGENIC
SBS	Chr8	4289995	T-A	HET	INTERGENIC
SBS	Chr8	4289996	C-A	HET	INTERGENIC
SBS	Chr8	5194750	G-A	HET	INTERGENIC

Deletions: 52

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	182607	182612	5
Deletion	Chr1	723520	723521	1
Deletion	Chr11	1339527	1339534	7
Deletion	Chr8	2618311	2618312	1
Deletion	Chr6	3469880	3469890	10	LOC_Os06g07240
Deletion	Chr3	4054484	4054491	7
Deletion	Chr12	4756709	4756710	1
Deletion	Chr6	4825514	4825515	1
Deletion	Chr8	5020108	5020116	8	LOC_Os08g08670
Deletion	Chr4	5253034	5253035	1
Deletion	Chr1	5483257	5483258	1
Deletion	Chr12	7688311	7688315	4
Deletion	Chr3	9303454	9303458	4
Deletion	Chr10	9779510	9779517	7
Deletion	Chr2	10185620	10185634	14
Deletion	Chr1	10596222	10596223	1
Deletion	Chr10	11887008	11887009	1
Deletion	Chr3	12226563	12226564	1
Deletion	Chr8	12814398	12814399	1
Deletion	Chr1	13618032	13618052	20
Deletion	Chr11	14744328	14744334	6
Deletion	Chr11	14866277	14866278	1
Deletion	Chr12	14897338	14897361	23	LOC_Os12g25710
Deletion	Chr7	14909655	14909659	4
Deletion	Chr2	16093881	16093884	3	LOC_Os02g27310
Deletion	Chr11	16711936	16711939	3
Deletion	Chr8	16951770	16951778	8	LOC_Os08g27824
Deletion	Chr2	17701939	17701940	1
Deletion	Chr2	18278740	18278744	4	LOC_Os02g30680
Deletion	Chr11	18674862	18674866	4
Deletion	Chr10	19464993	19464998	5
Deletion	Chr7	21106305	21106311	6
Deletion	Chr10	21512998	21513025	27
Deletion	Chr8	21744799	21744803	4
Deletion	Chr8	21834767	21834773	6
Deletion	Chr5	22626968	22627001	33	LOC_Os05g38570
Deletion	Chr2	22691325	22697918	6593	3
Deletion	Chr1	22753305	22753317	12
Deletion	Chr2	22782000	22782007	7
Deletion	Chr4	24102042	24102044	2	LOC_Os04g40590
Deletion	Chr3	24859346	24859360	14	LOC_Os03g44240
Deletion	Chr8	25769465	25769471	6
Deletion	Chr1	25783936	25783940	4
Deletion	Chr5	26386454	26390446	3992	2
Deletion	Chr4	26727371	26727380	9	LOC_Os04g45240
Deletion	Chr3	27272952	27272963	11
Deletion	Chr5	27293129	27293131	2
Deletion	Chr2	27367449	27367451	2
Deletion	Chr3	27413538	27413562	24	LOC_Os03g48180
Deletion	Chr6	29028536	29030975	2439
Deletion	Chr1	30982912	30982913	1
Deletion	Chr1	31140317	31140325	8

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	19701411	19701411	1
Insertion	Chr10	2543902	2543934	33	LOC_Os10g05190
Insertion	Chr3	22561110	22561111	2
Insertion	Chr3	24650290	24650292	3
Insertion	Chr5	5462300	5462301	2
Insertion	Chr6	18627978	18627978	1
Insertion	Chr6	24945477	24945486	10
Insertion	Chr8	14893546	14893546	1	LOC_Os08g24640

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	22440753	22926030	LOC_Os02g37120
Inversion	Chr2	22440795	22691326	2
Inversion	Chr5	24158844	24345999
Inversion	Chr5	24158881	24346036

No Translocation

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