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Mutant Information

Mutant NameFN1451-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN1451-S Alignment File
Seed AvailabilityYes [Order Seeds]
Phenotype
  • TO:0000326 (Leaf Color) = Albino and Normal (6.67% Albino)
  • TO:0000137 (Days to heading) = Normal (Between 75% and 125%)
  • TO:0000346 (Tiller number) = Normal (Between 75% and 125%)
  • TO:0000430 (Germination Rate) = Normal (Between 75% and 125%)
For more information, please see this phenotype file
Mapping
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Variant Information

Single base substitutions: 23
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr111008871T-CHETINTERGENIC
SBSChr118759942T-CHETNON_SYNONYMOUS_CODINGLOC_Os11g15450
SBSChr1213802345G-THETNON_SYNONYMOUS_CODINGLOC_Os12g24220
SBSChr12737098G-AHETINTERGENIC
SBSChr214867574T-GHETINTERGENIC
SBSChr221094027T-AHOMOINTERGENIC
SBSChr336339415C-AHETINTERGENIC
SBSChr35462505T-GHETUTR_3_PRIME
SBSChr426713127G-THOMOINTRON
SBSChr45043692C-THETINTERGENIC
SBSChr515266531G-CHETUTR_5_PRIME
SBSChr519058981C-THETINTRON
SBSChr526720890G-AHOMOINTERGENIC
SBSChr610730117C-AHETINTERGENIC
SBSChr66580211G-THETINTERGENIC
SBSChr67195537G-AHETINTERGENIC
SBSChr717018312G-AHETSYNONYMOUS_CODING
SBSChr718416996A-THETUTR_5_PRIME
SBSChr74508412T-GHETINTERGENIC
SBSChr76085826A-THETINTERGENIC
SBSChr76837125G-CHETINTERGENIC
SBSChr88945677C-AHETINTRON
SBSChr91343747G-AHETINTERGENIC

Deletions: 18
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr63763333778971564LOC_Os06g01640
DeletionChr2141875014187544
DeletionChr9606824960682501
DeletionChr3909476390947641
DeletionChr413656895136569049
DeletionChr4141775971417762225
DeletionChr7148767771487678811
DeletionChr7153676961536770913
DeletionChr11181907671819077710
DeletionChr119770492197704997LOC_Os01g35710
DeletionChr1211647002116472525
DeletionChr922297555222975561
DeletionChr1022344703223447041
DeletionChr524254189242541923
DeletionChr11281777542817777622
DeletionChr431819225318192272
DeletionChr332092620320926211LOC_Os03g56300
DeletionChr133218735332187361LOC_Os01g57490

Insertions: 7
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr1213030378130303781
InsertionChr1227012459270124613
InsertionChr2185880401858805011
InsertionChr2664421966442202
InsertionChr3307245973072461115
InsertionChr520600027206000271
InsertionChr816622730166227312

Inversions: 1
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr71306762513768183LOC_Os07g23169

Translocations: 1
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr1111009190Chr102078909LOC_Os10g04400