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Mutant Information |
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Mutant Name | FN1451-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN1451-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 23
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 11008871 | T-C | HET | INTERGENIC | |
SBS | Chr11 | 8759942 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os11g15450 |
SBS | Chr12 | 13802345 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g24220 |
SBS | Chr12 | 737098 | G-A | HET | INTERGENIC | |
SBS | Chr2 | 14867574 | T-G | HET | INTERGENIC | |
SBS | Chr2 | 21094027 | T-A | HOMO | INTERGENIC | |
SBS | Chr3 | 36339415 | C-A | HET | INTERGENIC | |
SBS | Chr3 | 5462505 | T-G | HET | UTR_3_PRIME | |
SBS | Chr4 | 26713127 | G-T | HOMO | INTRON | |
SBS | Chr4 | 5043692 | C-T | HET | INTERGENIC | |
SBS | Chr5 | 15266531 | G-C | HET | UTR_5_PRIME | |
SBS | Chr5 | 19058981 | C-T | HET | INTRON | |
SBS | Chr5 | 26720890 | G-A | HOMO | INTERGENIC | |
SBS | Chr6 | 10730117 | C-A | HET | INTERGENIC | |
SBS | Chr6 | 6580211 | G-T | HET | INTERGENIC | |
SBS | Chr6 | 7195537 | G-A | HET | INTERGENIC | |
SBS | Chr7 | 17018312 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr7 | 18416996 | A-T | HET | UTR_5_PRIME | |
SBS | Chr7 | 4508412 | T-G | HET | INTERGENIC | |
SBS | Chr7 | 6085826 | A-T | HET | INTERGENIC | |
SBS | Chr7 | 6837125 | G-C | HET | INTERGENIC | |
SBS | Chr8 | 8945677 | C-A | HET | INTRON | |
SBS | Chr9 | 1343747 | G-A | HET | INTERGENIC |
Deletions: 18
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr6 | 376333 | 377897 | 1564 | LOC_Os06g01640 |
Deletion | Chr2 | 1418750 | 1418754 | 4 | |
Deletion | Chr9 | 6068249 | 6068250 | 1 | |
Deletion | Chr3 | 9094763 | 9094764 | 1 | |
Deletion | Chr4 | 13656895 | 13656904 | 9 | |
Deletion | Chr4 | 14177597 | 14177622 | 25 | |
Deletion | Chr7 | 14876777 | 14876788 | 11 | |
Deletion | Chr7 | 15367696 | 15367709 | 13 | |
Deletion | Chr11 | 18190767 | 18190777 | 10 | |
Deletion | Chr1 | 19770492 | 19770499 | 7 | LOC_Os01g35710 |
Deletion | Chr1 | 21164700 | 21164725 | 25 | |
Deletion | Chr9 | 22297555 | 22297556 | 1 | |
Deletion | Chr10 | 22344703 | 22344704 | 1 | |
Deletion | Chr5 | 24254189 | 24254192 | 3 | |
Deletion | Chr11 | 28177754 | 28177776 | 22 | |
Deletion | Chr4 | 31819225 | 31819227 | 2 | |
Deletion | Chr3 | 32092620 | 32092621 | 1 | LOC_Os03g56300 |
Deletion | Chr1 | 33218735 | 33218736 | 1 | LOC_Os01g57490 |
Insertions: 7
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr7 | 13067625 | 13768183 | LOC_Os07g23169 |
Translocations: 1
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 11009190 | Chr10 | 2078909 | LOC_Os10g04400 |