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Mutant Information

Mutant Name	FN1452-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1452-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11958830	G-T	HET	INTRON
SBS	Chr1	28151786	G-A	HET	INTERGENIC
SBS	Chr2	4134343	G-T	HET	INTERGENIC
SBS	Chr2	4219768	A-T	HET	INTERGENIC
SBS	Chr2	9563474	G-T	HET	SYNONYMOUS_CODING
SBS	Chr2	13884176	G-A	HOMO	INTERGENIC
SBS	Chr3	10438218	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g18630
SBS	Chr3	11097630	G-C	HET	INTRON
SBS	Chr3	11329453	T-C	HET	INTERGENIC
SBS	Chr3	18632069	T-A	HET	INTERGENIC
SBS	Chr4	10426458	G-T	HET	INTERGENIC
SBS	Chr4	18313549	C-G	HET	INTERGENIC
SBS	Chr5	12084475	C-A	HET	INTERGENIC
SBS	Chr5	12084477	T-C	HET	INTERGENIC
SBS	Chr6	4745359	T-G	HOMO	INTERGENIC
SBS	Chr6	9038607	C-T	HET	INTERGENIC
SBS	Chr6	29131839	G-A	HET	INTERGENIC
SBS	Chr8	3594125	G-T	HET	INTERGENIC
SBS	Chr8	6371845	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g10820
SBS	Chr8	9799919	G-A	HET	INTERGENIC
SBS	Chr8	14906686	G-T	HET	INTERGENIC
SBS	Chr8	22234755	C-T	HET	INTERGENIC
SBS	Chr9	749557	T-A	HET	INTERGENIC
SBS	Chr9	2615470	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g04890
SBS	Chr9	20677536	G-A	HET	INTRON
SBS	Chr10	6523880	G-A	HET	INTRON
SBS	Chr10	18758577	C-T	HET	INTERGENIC
SBS	Chr12	9711273	G-C	HET	INTERGENIC
SBS	Chr12	13173457	G-C	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	271065	271072	7	LOC_Os02g01460
Deletion	Chr11	734069	734070	1
Deletion	Chr1	841775	841787	12	LOC_Os01g02550
Deletion	Chr7	1588066	1588067	1
Deletion	Chr2	3475867	3475876	9
Deletion	Chr4	3476308	3476313	5
Deletion	Chr2	3479001	3541000	62000	6
Deletion	Chr7	4419431	4419439	8
Deletion	Chr8	5867030	5867036	6
Deletion	Chr10	8508332	8508341	9	LOC_Os10g16990
Deletion	Chr8	11148717	11148718	1	LOC_Os08g18180
Deletion	Chr12	14037047	14037048	1
Deletion	Chr6	14855080	14855092	12
Deletion	Chr6	14893001	14959000	66000	10
Deletion	Chr2	15280600	15280606	6
Deletion	Chr8	16875679	16875682	3
Deletion	Chr8	17304032	17304033	1
Deletion	Chr8	17533910	17533911	1
Deletion	Chr1	18465560	18465562	2
Deletion	Chr8	19211625	19211629	4
Deletion	Chr12	19962612	19962613	1
Deletion	Chr10	22585480	22585481	1
Deletion	Chr2	24199178	24199183	5
Deletion	Chr3	26027211	26027212	1
Deletion	Chr4	26121521	26121551	30
Deletion	Chr6	26483001	27360000	877000	133
Deletion	Chr12	27025881	27025883	2	2
Deletion	Chr5	27057815	27057830	15	LOC_Os05g46740
Deletion	Chr2	27846684	27846698	14
Deletion	Chr1	38280898	38280906	8

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	27393345	27393345	1
Insertion	Chr4	21130579	21130580	2
Insertion	Chr9	18029290	18029291	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	26483171	27507005	LOC_Os06g43960

No Translocation

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