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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16045861	C-G	HET	INTERGENIC
SBS	Chr1	19363112	G-A	HET	INTERGENIC
SBS	Chr1	1974296	G-A	HET	INTRON
SBS	Chr1	22475214	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g39850
SBS	Chr1	22530093	T-C	HET	INTERGENIC
SBS	Chr1	38530708	T-A	HET	INTERGENIC
SBS	Chr10	16731741	C-T	HET	SPLICE_SITE_DONOR	LOC_Os10g31864
SBS	Chr10	610475	T-A	HOMO	INTERGENIC
SBS	Chr10	8143135	G-T	HET	INTERGENIC
SBS	Chr11	15054832	G-A	HOMO	INTERGENIC
SBS	Chr11	506546	G-A	HET	INTERGENIC
SBS	Chr12	4334863	A-G	HET	UTR_3_PRIME
SBS	Chr2	115824	A-T	HOMO	INTERGENIC
SBS	Chr2	1963268	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g04440
SBS	Chr2	20065076	A-T	HET	INTERGENIC
SBS	Chr3	11685279	G-A	HET	INTERGENIC
SBS	Chr3	17370683	C-T	HET	INTRON
SBS	Chr3	26047137	T-A	HET	INTERGENIC
SBS	Chr3	33252240	C-T	HET	INTERGENIC
SBS	Chr4	13103165	G-A	HET	INTERGENIC
SBS	Chr4	19531935	T-C	HET	INTERGENIC
SBS	Chr4	25694895	A-G	HOMO	INTERGENIC
SBS	Chr4	31345109	A-T	HET	INTERGENIC
SBS	Chr4	33160682	A-G	HET	INTERGENIC
SBS	Chr5	12672967	C-A	HET	INTERGENIC
SBS	Chr5	15449436	C-A	HET	INTERGENIC
SBS	Chr5	18648370	T-A	HET	INTERGENIC
SBS	Chr5	5260643	G-A	HET	UTR_3_PRIME
SBS	Chr6	14853795	A-G	HET	INTERGENIC
SBS	Chr8	13573305	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g22540
SBS	Chr8	19046061	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g30850
SBS	Chr8	19046062	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	22369638	G-A	HET	SYNONYMOUS_CODING

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	2740820	2740912	92
Deletion	Chr2	3293516	3293521	5	LOC_Os02g06580
Deletion	Chr12	3423797	3423823	26
Deletion	Chr1	4052485	4052486	1	LOC_Os01g08270
Deletion	Chr3	4372472	4372480	8	LOC_Os03g08500
Deletion	Chr4	7331929	7331943	14	LOC_Os04g13240
Deletion	Chr4	7381594	7381613	19
Deletion	Chr4	7834181	7834187	6
Deletion	Chr9	8022902	8022909	7	LOC_Os09g13710
Deletion	Chr11	8857487	8857492	5
Deletion	Chr2	12173966	12173967	1	LOC_Os02g20660
Deletion	Chr10	18363836	18363838	2	LOC_Os10g34430
Deletion	Chr3	18372966	18372967	1
Deletion	Chr3	21738001	22118000	380000	57
Deletion	Chr4	23463682	23463683	1	LOC_Os04g39420
Deletion	Chr2	24025481	24025497	16	LOC_Os02g39764
Deletion	Chr6	25057131	25065229	8098	LOC_Os06g41790
Deletion	Chr6	26011140	26011147	7
Deletion	Chr1	26573691	26573702	11	LOC_Os01g46660
Deletion	Chr1	30567687	30567689	2
Deletion	Chr4	31908183	31908189	6
Deletion	Chr3	32978808	32978809	1
Deletion	Chr1	39291779	39291782	3	LOC_Os01g67590
Deletion	Chr1	41168764	41168772	8

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	40469277	40469278	2
Insertion	Chr7	4772160	4772160	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	19284032	21413962

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	4838478	Chr4	18124174	LOC_Os04g30370

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