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Mutant Information

Mutant Name	FN1456-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1456-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4329260	C-A	HET	UTR_3_PRIME
SBS	Chr1	27361651	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g47800
SBS	Chr2	11721731	G-A	Homo	INTRON
SBS	Chr2	12225367	T-A	Homo	INTERGENIC
SBS	Chr2	24895685	G-A	HET	INTERGENIC
SBS	Chr3	9409857	T-C	Homo	INTERGENIC
SBS	Chr3	19562978	G-A	HET	INTERGENIC
SBS	Chr4	1941558	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	13442274	T-A	Homo	INTERGENIC
SBS	Chr5	818597	A-T	Homo	INTERGENIC
SBS	Chr5	7447176	A-G	Homo	UTR_5_PRIME
SBS	Chr6	888968	G-A	Homo	INTRON
SBS	Chr6	5036271	T-C	HET	UTR_3_PRIME
SBS	Chr6	10346489	T-A	HET	INTRON
SBS	Chr7	6197881	G-C	HET	INTERGENIC
SBS	Chr7	19805480	C-G	HET	INTERGENIC
SBS	Chr8	9978269	G-A	HET	INTRON
SBS	Chr8	18653741	C-A	Homo	INTERGENIC
SBS	Chr8	27218070	G-A	Homo	INTERGENIC
SBS	Chr9	13439906	T-G	HET	INTERGENIC
SBS	Chr10	2389544	G-A	HET	INTRON
SBS	Chr10	6779463	C-T	HET	INTERGENIC
SBS	Chr10	8747402	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g17360
SBS	Chr10	15438224	G-T	HET	INTERGENIC
SBS	Chr10	22451094	A-T	HET	INTERGENIC
SBS	Chr11	6724327	T-C	HET	INTERGENIC
SBS	Chr11	8679039	A-C	HET	UTR_3_PRIME
SBS	Chr11	17653642	T-G	HET	INTERGENIC
SBS	Chr12	2103050	C-T	HET	INTERGENIC
SBS	Chr12	4646577	T-C	HET	INTRON
SBS	Chr12	15158240	T-A	HET	INTERGENIC

Deletions: 38

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	829242	829244	2	LOC_Os06g02410
Deletion	Chr1	1064230	1064237	7
Deletion	Chr4	2337963	2337970	7
Deletion	Chr7	2736346	2736348	2
Deletion	Chr3	3561271	3561275	4
Deletion	Chr9	4040498	4040499	1
Deletion	Chr7	4137470	4137474	4
Deletion	Chr4	5420532	5420579	47
Deletion	Chr9	5571355	5571356	1
Deletion	Chr9	5844010	5844011	1
Deletion	Chr10	7157992	7158343	351
Deletion	Chr4	9205871	9205872	1
Deletion	Chr12	10622807	10622813	6
Deletion	Chr3	10905068	10905076	8
Deletion	Chr2	11491965	11491967	2
Deletion	Chr6	12504505	12504506	1
Deletion	Chr12	12896716	12896717	1
Deletion	Chr10	15417948	15418309	361	LOC_Os10g29650
Deletion	Chr10	15436342	15436347	5
Deletion	Chr11	15710932	15710954	22
Deletion	Chr8	16534098	16534099	1
Deletion	Chr12	16810046	16810056	10
Deletion	Chr1	16867602	16877551	9949	LOC_Os01g30936
Deletion	Chr6	18694444	18694445	1
Deletion	Chr3	19188545	19188547	2
Deletion	Chr11	20175707	20175739	32	LOC_Os11g34440
Deletion	Chr7	20518301	20518350	49
Deletion	Chr8	21060328	21060330	2
Deletion	Chr11	21669267	21669273	6
Deletion	Chr8	24348727	24348728	1
Deletion	Chr12	25469460	25469462	2
Deletion	Chr2	25609189	25609190	1
Deletion	Chr2	25886904	25886910	6
Deletion	Chr1	32648440	32648441	1
Deletion	Chr2	33793113	33793123	10
Deletion	Chr1	36600034	36600035	1
Deletion	Chr1	39284995	39284996	1
Deletion	Chr1	41598307	41598318	11	LOC_Os01g71820

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	23903928	23903929	2
Insertion	Chr5	16493083	16493083	1
Insertion	Chr1	9464647	9464652	6
Insertion	Chr2	14059554	14059555	2
Insertion	Chr2	33236849	33236915	67
Insertion	Chr6	5315610	5315612	3	LOC_Os06g10350
Insertion	Chr7	654349	654362	14
Insertion	Chr9	3549115	3549193	79
Insertion	Chr9	12596507	12596514	8
Insertion	Chr12	588327	588327	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	1869483	1940704	LOC_Os06g04520
Inversion	Chr6	5389648	5479622
Inversion	Chr6	5389749	5479624
Inversion	Chr7	19299660	19554498

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	16409663	Chr7	12636485
Translocation	Chr11	16411228	Chr7	12636522	LOC_Os11g28500
Translocation	Chr7	19299664	Chr6	1940717	LOC_Os06g04520
Translocation	Chr7	19300326	Chr6	1869490

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