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Mutant Information

Mutant Name	FN1458-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1458-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31704951	C-A	HET	INTERGENIC
SBS	Chr1	41827538	G-A	HOMO	INTERGENIC
SBS	Chr11	10845900	C-T	HOMO	INTRON
SBS	Chr11	15014208	G-A	HET	INTERGENIC
SBS	Chr11	5832180	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr12	14158650	G-A	HET	INTERGENIC
SBS	Chr12	17115324	G-T	HET	INTRON
SBS	Chr12	24376660	A-G	HOMO	INTERGENIC
SBS	Chr2	17648381	C-A	HET	INTERGENIC
SBS	Chr2	28735908	G-A	HET	INTERGENIC
SBS	Chr2	34835550	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g56840
SBS	Chr2	34835551	T-C	HET	SYNONYMOUS_CODING
SBS	Chr2	7023269	C-T	HET	INTRON
SBS	Chr3	12583811	C-T	HOMO	INTERGENIC
SBS	Chr3	26112283	G-A	HET	INTERGENIC
SBS	Chr3	32249801	G-C	HOMO	INTRON
SBS	Chr4	10030843	C-T	HET	INTERGENIC
SBS	Chr4	12920960	A-G	HET	INTERGENIC
SBS	Chr4	13080978	G-A	HET	INTERGENIC
SBS	Chr4	1357859	G-A	HET	INTERGENIC
SBS	Chr4	17597885	T-G	HET	INTERGENIC
SBS	Chr4	17630114	C-A	HOMO	INTERGENIC
SBS	Chr4	18295699	T-G	HET	INTRON
SBS	Chr5	18470936	C-T	HET	INTERGENIC
SBS	Chr5	23970692	C-T	HOMO	INTRON
SBS	Chr5	24778346	T-A	HOMO	INTRON
SBS	Chr6	10914047	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	11383675	T-A	HET	INTRON
SBS	Chr6	17186426	G-A	HET	INTERGENIC
SBS	Chr6	2792366	A-T	HOMO	INTRON
SBS	Chr6	28261903	G-T	HET	INTERGENIC
SBS	Chr7	16129706	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g27610
SBS	Chr7	16143620	C-T	HET	INTERGENIC
SBS	Chr8	13668400	G-C	HET	INTRON
SBS	Chr8	14026605	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g23230
SBS	Chr8	25006433	T-G	HET	INTERGENIC
SBS	Chr8	5160174	C-A	HET	INTERGENIC
SBS	Chr9	3237368	T-A	HET	INTERGENIC
SBS	Chr9	4209820	G-A	HET	INTERGENIC
SBS	Chr9	8331468	G-A	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	321345	321347	2	LOC_Os10g01500
Deletion	Chr8	577757	577760	3	LOC_Os08g01930
Deletion	Chr11	2819922	2819938	16
Deletion	Chr3	4421687	4421688	1
Deletion	Chr2	5215279	5215289	10
Deletion	Chr9	6206546	6206554	8
Deletion	Chr5	6392116	6392128	12
Deletion	Chr1	9873867	9873868	1
Deletion	Chr2	11094872	11094873	1
Deletion	Chr6	11352627	11352629	2
Deletion	Chr5	15202774	15202781	7
Deletion	Chr2	17387178	17387184	6	LOC_Os02g29260
Deletion	Chr7	21392609	21392610	1	LOC_Os07g35720
Deletion	Chr8	21440466	21440470	4
Deletion	Chr11	22359293	22359302	9
Deletion	Chr3	23088049	23092741	4692	LOC_Os03g41510
Deletion	Chr12	24398534	24398538	4
Deletion	Chr5	26568155	26568156	1
Deletion	Chr8	27014819	27014821	2

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	4803269	4803270	2
Insertion	Chr2	17649774	17649774	1
Insertion	Chr3	381152	381157	6
Insertion	Chr4	14520872	14520873	2
Insertion	Chr5	5372746	5372753	8
Insertion	Chr5	6431033	6431034	2
Insertion	Chr6	23437640	23437641	2
Insertion	Chr8	23618571	23618571	1
Insertion	Chr9	11489817	11489817	1
Insertion	Chr9	420293	420302	10

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	26406024	26686431	LOC_Os06g44230
Inversion	Chr6	26406036	26686428	LOC_Os06g44230

No Translocation

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