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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27296844	A-T	HET	INTERGENIC
SBS	Chr10	21467441	G-A	HET	INTERGENIC
SBS	Chr12	14260677	C-G	HET	STOP_GAINED	LOC_Os12g24870
SBS	Chr2	10575966	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g18210
SBS	Chr2	15901371	C-T	HET	INTERGENIC
SBS	Chr3	1163150	G-A	HOMO	INTERGENIC
SBS	Chr3	13167563	A-G	HOMO	INTRON
SBS	Chr3	2930333	T-C	HOMO	INTRON
SBS	Chr3	34235510	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g60190
SBS	Chr3	34549673	C-T	HOMO	INTERGENIC
SBS	Chr3	34714130	A-G	HOMO	INTRON
SBS	Chr3	4887846	T-C	HET	INTERGENIC
SBS	Chr4	12970453	C-G	HET	INTERGENIC
SBS	Chr4	1398636	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03290
SBS	Chr4	16756311	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	4901618	G-A	HET	INTERGENIC
SBS	Chr4	9750169	A-G	HET	INTRON
SBS	Chr5	18883147	A-G	HET	INTRON
SBS	Chr5	21071461	T-G	HOMO	INTERGENIC
SBS	Chr5	24448941	C-A	HOMO	INTERGENIC
SBS	Chr5	5379369	C-T	HET	INTERGENIC
SBS	Chr6	7476166	G-T	HET	INTERGENIC
SBS	Chr7	8993736	A-C	HOMO	INTERGENIC
SBS	Chr8	6182936	A-G	HET	INTERGENIC
SBS	Chr9	5395808	G-A	HET	STOP_GAINED	LOC_Os09g09930
SBS	Chr9	8270346	T-C	HOMO	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	2633762	2633764	2
Deletion	Chr7	2891503	2891504	1
Deletion	Chr3	3085157	3085158	1
Deletion	Chr4	8311258	8311259	1
Deletion	Chr5	8935001	10608000	1673000	244
Deletion	Chr7	8984896	8984897	1
Deletion	Chr11	9412195	9412196	1
Deletion	Chr7	11024565	11024576	11
Deletion	Chr4	11131199	11131205	6	LOC_Os04g19960
Deletion	Chr8	12457938	12457954	16	LOC_Os08g20730
Deletion	Chr10	12549001	12676000	127000	21
Deletion	Chr6	12807343	12807345	2
Deletion	Chr11	12954100	12954109	9
Deletion	Chr10	12981755	12981784	29
Deletion	Chr11	13278620	13278621	1
Deletion	Chr1	14377199	14377207	8
Deletion	Chr7	15789158	15789159	1	LOC_Os07g27190
Deletion	Chr12	16530901	16530911	10
Deletion	Chr7	18512464	18512472	8
Deletion	Chr12	19372223	19372228	5	LOC_Os12g32120
Deletion	Chr4	20570450	20570459	9	LOC_Os04g33980
Deletion	Chr12	25951762	25951780	18
Deletion	Chr2	30606806	30606808	2
Deletion	Chr4	31218809	31218819	10
Deletion	Chr1	35633238	35633246	8
Deletion	Chr1	37801579	37801580	1	LOC_Os01g65120

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	23745436	23745439	4
Insertion	Chr1	4876397	4876399	3
Insertion	Chr11	10895601	10895601	1
Insertion	Chr12	6624869	6624870	2
Insertion	Chr3	13121495	13121495	1
Insertion	Chr3	32604039	32604039	1
Insertion	Chr5	14576491	14576491	1
Insertion	Chr5	5637477	5637478	2
Insertion	Chr9	8979811	8979822	12

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	9306104	10200302	LOC_Os11g18120
Inversion	Chr11	9306141	10200289	LOC_Os11g18120
Inversion	Chr7	9620026	10530460	2

No Translocation

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