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Mutant Information

Mutant Name	FN1462-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1462-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21309711	G-A	HET	INTERGENIC
SBS	Chr10	4683527	C-T	HET	INTRON
SBS	Chr10	5128295	A-G	HET	SYNONYMOUS_CODING
SBS	Chr10	5898168	G-T	Homo	INTERGENIC
SBS	Chr11	13886395	T-G	HET	INTERGENIC
SBS	Chr12	1155717	C-A	HET	UTR_5_PRIME
SBS	Chr12	23994511	C-T	HET	INTRON
SBS	Chr12	25173153	G-A	HET	INTERGENIC
SBS	Chr12	8610822	G-T	Homo	INTRON
SBS	Chr2	26586538	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g44040
SBS	Chr2	5564020	A-G	Homo	INTERGENIC
SBS	Chr3	14150061	T-A	HET	UTR_3_PRIME
SBS	Chr3	14150062	G-A	HET	UTR_3_PRIME
SBS	Chr3	20125629	T-C	HET	INTERGENIC
SBS	Chr3	487107	C-T	HET	INTERGENIC
SBS	Chr3	8450083	A-T	HET	INTERGENIC
SBS	Chr4	8408192	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	1228267	A-T	HET	STOP_GAINED	LOC_Os05g03100
SBS	Chr5	29889987	C-T	HET	INTRON
SBS	Chr6	30436203	G-A	Homo	INTRON
SBS	Chr6	9778746	C-T	HET	INTRON
SBS	Chr7	20783800	G-A	Homo	INTRON
SBS	Chr7	21018595	G-A	Homo	INTERGENIC
SBS	Chr7	21855712	T-A	Homo	INTRON
SBS	Chr8	1135130	G-A	HET	INTRON
SBS	Chr8	13777220	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr8	23244788	G-C	HET	INTERGENIC
SBS	Chr8	28107109	T-A	HET	INTERGENIC
SBS	Chr8	6730861	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g11470
SBS	Chr9	14189122	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g23810

Deletions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	5970	5976	6
Deletion	Chr8	302374	302375	1	LOC_Os08g01490
Deletion	Chr1	550853	550865	12
Deletion	Chr8	833101	833102	1
Deletion	Chr4	918001	948000	30000	3
Deletion	Chr4	1749448	1749450	2
Deletion	Chr4	2398790	2398791	1
Deletion	Chr7	3411009	3411027	18
Deletion	Chr10	4644970	4644971	1
Deletion	Chr8	5102283	5102808	525
Deletion	Chr9	5446363	5446366	3
Deletion	Chr10	6122942	6122945	3	LOC_Os10g11070
Deletion	Chr8	8151945	8151950	5
Deletion	Chr6	9778727	9778736	9
Deletion	Chr3	10228445	10228491	46
Deletion	Chr6	11331163	11331213	50
Deletion	Chr6	12208940	12208941	1
Deletion	Chr8	12963897	12963902	5
Deletion	Chr1	13396355	13396357	2	LOC_Os01g23810
Deletion	Chr3	14100458	14100459	1
Deletion	Chr6	14126579	14126580	1
Deletion	Chr1	14195946	14195951	5
Deletion	Chr1	16839712	16839713	1
Deletion	Chr6	20247483	20247520	37
Deletion	Chr6	20586603	20604297	17694	2
Deletion	Chr8	21108492	21108493	1
Deletion	Chr4	22116606	22116631	25
Deletion	Chr9	22604614	22604626	12	LOC_Os09g39320
Deletion	Chr6	24235698	24235706	8
Deletion	Chr1	24704067	24704068	1
Deletion	Chr12	25633644	25633647	3
Deletion	Chr3	29492827	29492830	3
Deletion	Chr4	30061576	30061577	1
Deletion	Chr3	30314812	30314912	100
Deletion	Chr1	31178619	31178628	9
Deletion	Chr3	31779351	31779352	1
Deletion	Chr1	32397393	32397394	1
Deletion	Chr1	35671123	35671125	2
Deletion	Chr1	42382129	42382133	4

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	39091185	39091185	1
Insertion	Chr2	803467	803467	1
Insertion	Chr4	14472838	14472869	32
Insertion	Chr6	21550623	21550687	65
Insertion	Chr7	6840964	6841009	46
Insertion	Chr9	4781773	4781774	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	11420162	16628348	LOC_Os08g27240
Inversion	Chr8	11420173	16628354	LOC_Os08g27240

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	9583663	Chr3	30314912

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