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Mutant Information

Mutant Name	FN1467-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1467-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1346163	T-A	HET	UTR_5_PRIME
SBS	Chr1	30424695	G-A	HET	INTERGENIC
SBS	Chr1	35831596	T-A	HOMO	INTERGENIC
SBS	Chr1	39921292	T-C	HET	INTERGENIC
SBS	Chr2	7267084	A-T	HOMO	UTR_3_PRIME
SBS	Chr2	21878221	C-A	HOMO	INTERGENIC
SBS	Chr2	21878222	A-T	HOMO	INTERGENIC
SBS	Chr2	21878224	A-T	HOMO	INTERGENIC
SBS	Chr3	18714187	G-A	HET	INTERGENIC
SBS	Chr3	33419427	C-A	HET	INTERGENIC
SBS	Chr3	34355514	G-A	HET	INTERGENIC
SBS	Chr3	34400916	A-T	HET	INTERGENIC
SBS	Chr4	692542	T-C	HET	INTERGENIC
SBS	Chr4	3063402	A-T	HET	INTERGENIC
SBS	Chr4	8397858	A-G	HET	INTERGENIC
SBS	Chr4	8888993	A-T	HET	INTERGENIC
SBS	Chr4	22642831	C-T	HOMO	INTERGENIC
SBS	Chr4	28317851	C-T	HET	INTERGENIC
SBS	Chr4	33511067	G-A	HOMO	INTERGENIC
SBS	Chr5	26093717	G-A	HOMO	INTERGENIC
SBS	Chr5	29366762	G-A	HET	INTERGENIC
SBS	Chr6	3292372	G-A	HET	INTERGENIC
SBS	Chr6	3692102	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g07630
SBS	Chr7	2454744	A-G	HOMO	INTRON
SBS	Chr7	10540604	G-A	HET	INTERGENIC
SBS	Chr7	28828224	C-T	HET	INTERGENIC
SBS	Chr8	22527376	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g35700
SBS	Chr8	22892709	C-A	HET	UTR_3_PRIME
SBS	Chr8	25256038	C-T	HET	INTERGENIC
SBS	Chr8	26083689	T-C	HET	INTERGENIC
SBS	Chr8	26083716	T-A	HET	INTERGENIC
SBS	Chr9	14624644	A-G	HET	INTERGENIC
SBS	Chr10	9746421	A-T	HET	INTRON
SBS	Chr10	19325111	G-A	HET	INTERGENIC
SBS	Chr10	19325112	G-A	HET	INTERGENIC
SBS	Chr11	10865951	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g19060
SBS	Chr11	25832413	C-T	HET	INTRON
SBS	Chr12	2749946	G-T	HET	INTRON
SBS	Chr12	3292235	G-T	HOMO	INTERGENIC
SBS	Chr12	4972251	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g09480
SBS	Chr12	19663106	C-T	HOMO	INTERGENIC
SBS	Chr12	26806715	A-G	HOMO	START_GAINED	LOC_Os12g43165

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1453901	1453907	6
Deletion	Chr10	7525623	7525654	31
Deletion	Chr10	11209388	11209389	1
Deletion	Chr3	14361116	14361130	14
Deletion	Chr10	16891561	16891562	1
Deletion	Chr7	17276230	17276233	3	LOC_Os07g29440
Deletion	Chr3	17779812	17779837	25
Deletion	Chr2	19761039	19780526	19487	4
Deletion	Chr2	20302958	20320462	17504	2
Deletion	Chr11	22045801	22045802	1	LOC_Os11g37340
Deletion	Chr4	22319899	22319901	2
Deletion	Chr3	25652515	25652516	1
Deletion	Chr4	27001544	27001561	17
Deletion	Chr1	28368320	28368334	14	LOC_Os01g49340
Deletion	Chr3	33407042	33407047	5
Deletion	Chr3	34444783	34444795	12

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	12883923	12883924	2
Insertion	Chr1	20394327	20394328	2
Insertion	Chr1	11753586	11753586	1
Insertion	Chr10	2478261	2478262	2
Insertion	Chr12	19503149	19503150	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	6710805	7764206	LOC_Os04g12180
Inversion	Chr4	6715015	7764213	LOC_Os04g12190
Inversion	Chr10	19327190	19347194	LOC_Os10g36180
Inversion	Chr1	31569469	31756576	LOC_Os01g54900
Inversion	Chr1	31569741	31756584	LOC_Os01g54900

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	4169616	Chr1	31569477	2
Translocation	Chr8	5063837	Chr6	3022425
Translocation	Chr8	5435246	Chr2	1621705	LOC_Os02g03840
Translocation	Chr8	5436163	Chr1	31569731	2
Translocation	Chr8	5436210	Chr2	4169667	2
Translocation	Chr4	10240756	Chr2	26403808
Translocation	Chr7	17257745	Chr1	29500429	LOC_Os07g29390
Translocation	Chr7	17257746	Chr1	29500430	LOC_Os07g29390

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