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Mutant Information

Mutant Name	FN1468-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1468-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22090314	C-A	HET	INTRON
SBS	Chr1	24512984	C-A	HET	INTERGENIC
SBS	Chr1	25732281	G-A	HET	STOP_GAINED	LOC_Os01g45330
SBS	Chr1	33087102	A-G	HET	INTERGENIC
SBS	Chr1	38742937	T-C	HET	INTRON
SBS	Chr1	39098066	C-G	HET	INTERGENIC
SBS	Chr2	12834194	G-A	HET	INTERGENIC
SBS	Chr2	12834195	G-A	HET	INTERGENIC
SBS	Chr2	16607962	C-G	HET	INTRON
SBS	Chr3	1003855	T-A	HET	INTERGENIC
SBS	Chr3	3142692	C-T	HET	INTERGENIC
SBS	Chr3	27694354	T-C	HET	INTERGENIC
SBS	Chr4	5222379	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g09730
SBS	Chr4	10465734	G-A	HET	INTERGENIC
SBS	Chr4	22911599	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g38560
SBS	Chr6	2617627	C-T	Homo	INTRON
SBS	Chr7	9343932	C-T	Homo	INTERGENIC
SBS	Chr8	8870677	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g14744
SBS	Chr8	12488994	A-C	Homo	SYNONYMOUS_CODING
SBS	Chr8	17475520	A-T	HET	INTRON
SBS	Chr9	4018404	A-C	HET	INTRON
SBS	Chr9	11041965	T-C	HET	INTERGENIC
SBS	Chr9	15750896	G-A	Homo	INTERGENIC
SBS	Chr10	14018423	T-A	Homo	INTERGENIC
SBS	Chr11	9135681	T-G	HET	INTERGENIC
SBS	Chr12	15391786	A-G	HET	INTRON
SBS	Chr12	22929920	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g37340

Deletions: 38

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	450725	450757	32
Deletion	Chr2	1334150	1334160	10
Deletion	Chr4	2362749	2362762	13	LOC_Os04g04900
Deletion	Chr4	2907856	2907857	1
Deletion	Chr5	4444731	4444733	2
Deletion	Chr11	4922739	4922740	1
Deletion	Chr12	5500830	5500838	8
Deletion	Chr1	5604794	5604807	13
Deletion	Chr4	6640200	6640206	6
Deletion	Chr8	6841552	6841553	1
Deletion	Chr7	7216298	7216304	6
Deletion	Chr1	8790922	8790924	2	LOC_Os01g15630
Deletion	Chr7	9559331	9559341	10
Deletion	Chr6	9594968	9594970	2
Deletion	Chr2	10187948	10187953	5
Deletion	Chr12	10618566	10618568	2
Deletion	Chr1	10788296	10788299	3	LOC_Os01g19090
Deletion	Chr2	12973932	12973934	2
Deletion	Chr11	13030898	13033251	2353	LOC_Os11g22650
Deletion	Chr6	14934626	14934627	1
Deletion	Chr2	16916001	16980000	64000	13
Deletion	Chr12	17634801	17634803	2
Deletion	Chr5	18078740	18078745	5
Deletion	Chr12	19591770	19591806	36
Deletion	Chr2	20227852	20227871	19
Deletion	Chr8	20486091	20486095	4
Deletion	Chr1	21956832	21956833	1
Deletion	Chr1	22278311	22278316	5
Deletion	Chr10	22395409	22395425	16
Deletion	Chr8	23588689	23588693	4
Deletion	Chr2	24898699	24898711	12
Deletion	Chr12	27430366	27430370	4	LOC_Os12g44230
Deletion	Chr6	28744622	28744623	1
Deletion	Chr4	29123347	29123361	14
Deletion	Chr6	30106588	30106589	1	LOC_Os06g49760
Deletion	Chr1	31865077	31865078	1
Deletion	Chr1	35434708	35434709	1
Deletion	Chr1	41773918	41773923	5

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	29926067	29926068	2
Insertion	Chr5	20239916	20239917	2
Insertion	Chr1	11768578	11768579	2
Insertion	Chr1	39097017	39097017	1
Insertion	Chr1	42459782	42459783	2
Insertion	Chr2	13986740	13986740	1
Insertion	Chr2	23649327	23649356	30
Insertion	Chr3	14630851	14630868	18
Insertion	Chr4	28151654	28151675	22
Insertion	Chr5	19186926	19186941	16
Insertion	Chr5	25089464	25089467	4
Insertion	Chr9	10443963	10443963	1
Insertion	Chr11	13497906	13497923	18
Insertion	Chr11	22748447	22748454	8
Insertion	Chr12	5943759	5943759	1
Insertion	Chr12	7345280	7345289	10
Insertion	Chr12	22798936	22798955	20
Insertion	Chr12	24805924	24805943	20

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	648329	24575314	LOC_Os07g41080
Inversion	Chr8	1283774	1381267	2
Inversion	Chr8	1283801	1382306	2
Inversion	Chr7	24573899	24574263
Inversion	Chr6	28985278	29616941	LOC_Os06g48920

No Translocation

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