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Mutant Information

Mutant Name	FN1473-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1473-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16767809	C-T	HET	INTERGENIC
SBS	Chr1	41841047	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g72120
SBS	Chr1	9909848	T-C	HET	INTERGENIC
SBS	Chr10	7214163	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	8633438	T-G	HET	INTERGENIC
SBS	Chr11	14480752	G-A	Homo	INTRON
SBS	Chr11	16074557	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g27940
SBS	Chr11	18344360	C-A	Homo	INTERGENIC
SBS	Chr11	8088195	A-G	Homo	INTERGENIC
SBS	Chr2	10199560	T-A	HET	INTRON
SBS	Chr2	27042944	A-T	HET	INTERGENIC
SBS	Chr2	7739451	C-T	HET	INTERGENIC
SBS	Chr3	13261868	G-A	HET	INTERGENIC
SBS	Chr3	23649278	G-A	HET	INTRON
SBS	Chr3	2997285	C-T	HET	INTERGENIC
SBS	Chr4	23283993	A-G	Homo	INTERGENIC
SBS	Chr4	32928482	A-G	HET	INTERGENIC
SBS	Chr5	23022831	A-T	Homo	INTERGENIC
SBS	Chr6	1146684	G-A	Homo	INTERGENIC
SBS	Chr6	15028041	G-A	HET	INTRON
SBS	Chr6	15572995	C-T	HET	INTERGENIC
SBS	Chr6	25869104	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	7443142	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g13500
SBS	Chr7	14954331	A-T	HET	INTERGENIC
SBS	Chr7	21992843	C-T	Homo	INTERGENIC
SBS	Chr7	9560290	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	21747708	T-A	Homo	INTERGENIC
SBS	Chr8	6777746	C-G	Homo	INTRON
SBS	Chr9	14445008	C-T	HET	INTERGENIC
SBS	Chr9	15683814	A-G	Homo	INTERGENIC

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	261925	261933	8
Deletion	Chr1	1668713	1668721	8
Deletion	Chr9	2244135	2244144	9	LOC_Os09g04240
Deletion	Chr1	3291119	3298000	6881	4
Deletion	Chr1	3390881	3390933	52
Deletion	Chr9	3566760	3566772	12
Deletion	Chr4	5166405	5166415	10
Deletion	Chr7	6145047	6145077	30
Deletion	Chr4	7587336	7587338	2
Deletion	Chr11	8839144	8839146	2
Deletion	Chr6	9136839	9136857	18
Deletion	Chr11	10208776	10208777	1	LOC_Os11g18140
Deletion	Chr6	10948621	10948622	1	LOC_Os06g19240
Deletion	Chr9	10967538	10967555	17
Deletion	Chr3	11974482	11974489	7	LOC_Os03g21060
Deletion	Chr9	13019868	13021627	1759	LOC_Os09g21520
Deletion	Chr9	13723122	13723152	30
Deletion	Chr10	14720405	14720427	22
Deletion	Chr3	15774714	15774715	1
Deletion	Chr1	17330029	17330030	1
Deletion	Chr12	19333288	19333299	11
Deletion	Chr3	19944688	19944689	1
Deletion	Chr11	20063236	20063238	2
Deletion	Chr5	20439360	20439361	1
Deletion	Chr11	20976959	20976960	1	LOC_Os11g35730
Deletion	Chr12	21051656	21051657	1
Deletion	Chr8	21063090	21063091	1
Deletion	Chr4	21274688	21274689	1
Deletion	Chr2	21304549	21304558	9	LOC_Os02g35440
Deletion	Chr8	22733661	22733670	9
Deletion	Chr8	25116211	25116220	9	LOC_Os08g39680
Deletion	Chr2	27654437	27654455	18

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	10105196	10105196	1
Insertion	Chr1	19910040	19910040	1
Insertion	Chr11	5051071	5051071	1	LOC_Os11g09414
Insertion	Chr12	11007901	11007902	2
Insertion	Chr2	11335492	11335494	3	LOC_Os02g19410
Insertion	Chr2	24309576	24309577	2
Insertion	Chr4	31026858	31026901	44	LOC_Os04g52230
Insertion	Chr6	7561931	7561932	2
Insertion	Chr8	2115886	2115895	10	LOC_Os08g04310

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	6870287	9704732	2
Inversion	Chr4	6870602	9649970	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	8141544	Chr4	6870297	LOC_Os04g12430
Translocation	Chr11	8141608	Chr4	6870630	LOC_Os04g12430
Translocation	Chr6	14438352	Chr4	9649194	LOC_Os04g17630

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