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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7845313	A-C	HET	INTERGENIC
SBS	Chr1	8030658	C-T	HET	INTERGENIC
SBS	Chr1	8305887	C-T	Homo	UTR_3_PRIME
SBS	Chr1	35322221	T-C	HET	INTRON
SBS	Chr1	39539917	C-T	Homo	INTRON
SBS	Chr2	1211243	T-C	Homo	INTERGENIC
SBS	Chr2	16025743	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g27230
SBS	Chr3	12355782	G-A	HET	INTRON
SBS	Chr3	17397589	G-A	HET	INTERGENIC
SBS	Chr4	3947226	T-C	HET	INTERGENIC
SBS	Chr4	13700494	C-T	HET	INTERGENIC
SBS	Chr5	15711293	G-A	HET	INTERGENIC
SBS	Chr5	16822508	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	18638646	G-C	HET	INTERGENIC
SBS	Chr5	23723271	G-A	HET	INTRON
SBS	Chr6	1107683	G-A	HET	INTERGENIC
SBS	Chr6	4198673	G-A	HET	INTERGENIC
SBS	Chr6	5489616	C-G	HET	INTERGENIC
SBS	Chr6	16123780	G-A	Homo	INTERGENIC
SBS	Chr6	16306382	G-T	Homo	INTERGENIC
SBS	Chr6	17656121	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g30520
SBS	Chr6	22422828	C-T	Homo	INTERGENIC
SBS	Chr6	24911544	C-T	HET	INTERGENIC
SBS	Chr7	2024457	G-T	HET	INTRON
SBS	Chr7	26871529	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g45030
SBS	Chr8	6685630	T-C	HET	INTERGENIC
SBS	Chr8	11991730	A-T	HET	INTERGENIC
SBS	Chr8	27921511	G-T	Homo	INTRON
SBS	Chr10	327999	C-T	HET	INTERGENIC
SBS	Chr11	9333840	T-A	HET	INTERGENIC
SBS	Chr12	1529355	A-T	HET	INTRON
SBS	Chr12	19927565	G-A	HET	SYNONYMOUS_CODING

Deletions: 37

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	122496	122505	9	LOC_Os07g01214
Deletion	Chr6	316828	316844	16
Deletion	Chr5	1130222	1130228	6	LOC_Os05g03000
Deletion	Chr5	1308231	1308233	2	LOC_Os05g03230
Deletion	Chr7	2562317	2562318	1	LOC_Os07g05490
Deletion	Chr8	3586676	3586677	1
Deletion	Chr10	4855331	4855332	1
Deletion	Chr11	5714599	5714601	2
Deletion	Chr11	5785664	5785665	1
Deletion	Chr5	6539473	6539474	1
Deletion	Chr12	6579285	6579286	1
Deletion	Chr6	6645585	6645587	2
Deletion	Chr9	6868776	6868777	1
Deletion	Chr8	8388697	8388699	2
Deletion	Chr10	9069847	9069852	5
Deletion	Chr5	9222825	9222826	1	LOC_Os05g16280
Deletion	Chr6	10263451	10263452	1
Deletion	Chr9	12002210	12002250	40
Deletion	Chr4	13970121	13970122	1
Deletion	Chr7	14428825	14428831	6
Deletion	Chr7	15569822	15569833	11
Deletion	Chr9	15981203	15981204	1
Deletion	Chr8	18535036	18535062	26
Deletion	Chr4	19818159	19818161	2
Deletion	Chr6	20553686	20553687	1
Deletion	Chr5	20583019	20583020	1	LOC_Os05g34680
Deletion	Chr7	20918402	20918403	1
Deletion	Chr10	22744208	22744209	1
Deletion	Chr4	22859680	22859681	1
Deletion	Chr7	23329227	23329241	14
Deletion	Chr6	24848222	24848226	4
Deletion	Chr6	27481958	27481997	39
Deletion	Chr11	27774733	27774735	2
Deletion	Chr7	28667755	28667756	1	LOC_Os07g48000
Deletion	Chr5	29396564	29396568	4
Deletion	Chr4	31777671	31777673	2	LOC_Os04g53360
Deletion	Chr1	38794355	38794379	24

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	2359536	2359537	2
Insertion	Chr1	16649328	16649343	16
Insertion	Chr3	1999064	1999065	2
Insertion	Chr4	26443891	26443892	2
Insertion	Chr6	5419944	5419944	1
Insertion	Chr6	8803213	8803213	1
Insertion	Chr6	20860801	20860803	3	LOC_Os06g35740
Insertion	Chr10	5332346	5332347	2
Insertion	Chr11	6813044	6813044	1
Insertion	Chr11	16262716	16262716	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1169406	1372477	LOC_Os04g03230
Inversion	Chr12	9522960	10254739	LOC_Os12g17880
Inversion	Chr12	9522971	9606766
Inversion	Chr7	12759632	12792462	LOC_Os07g22640
Inversion	Chr7	12759655	12792467	LOC_Os07g22640

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2147809	Chr8	2064292	2
Translocation	Chr11	2148049	Chr8	2064210	2
Translocation	Chr3	27738919	Chr1	11612766	LOC_Os03g48660
Translocation	Chr3	27738924	Chr1	11620913	2

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr12	9414259	9712973	298714	50

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