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Mutant Information

Mutant Name	FN1480-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1480-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7116714	T-A	HET	INTRON
SBS	Chr1	9590693	G-T	HET	INTERGENIC
SBS	Chr10	18010044	C-A	HET	INTERGENIC
SBS	Chr11	10001303	C-T	HET	INTERGENIC
SBS	Chr11	13073011	G-C	HET	INTRON
SBS	Chr11	2909937	T-C	HET	UTR_3_PRIME
SBS	Chr11	563799	T-A	Homo	INTRON
SBS	Chr11	563801	C-A	HET	INTRON
SBS	Chr12	23471511	C-T	Homo	INTRON
SBS	Chr2	6362933	G-A	HET	INTERGENIC
SBS	Chr3	27480567	G-A	Homo	INTERGENIC
SBS	Chr3	29369954	G-T	HET	INTERGENIC
SBS	Chr4	17551913	C-T	Homo	INTERGENIC
SBS	Chr4	23381239	G-A	HET	INTERGENIC
SBS	Chr4	5659729	A-T	HET	SYNONYMOUS_CODING
SBS	Chr4	9594148	T-A	HET	INTERGENIC
SBS	Chr5	12747680	T-G	HET	INTERGENIC
SBS	Chr5	14313272	C-T	HET	INTERGENIC
SBS	Chr5	5154448	C-A	Homo	INTRON
SBS	Chr6	20188135	A-T	HET	INTERGENIC
SBS	Chr6	7007712	G-A	HET	INTRON
SBS	Chr8	11002016	G-A	Homo	INTERGENIC
SBS	Chr8	15847112	A-G	HET	INTERGENIC
SBS	Chr8	17539170	A-T	HET	INTRON
SBS	Chr8	17598255	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	17860773	T-C	HET	INTERGENIC
SBS	Chr8	25164818	A-T	HET	INTERGENIC
SBS	Chr8	7170581	C-T	HET	INTRON
SBS	Chr8	9601011	G-A	Homo	INTERGENIC
SBS	Chr9	11977567	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g20000

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1544835	1544841	6
Deletion	Chr8	2061813	2061820	7
Deletion	Chr1	2294340	2294342	2
Deletion	Chr12	2423216	2423223	7
Deletion	Chr1	4705129	4705131	2
Deletion	Chr11	6256138	6256145	7	LOC_Os11g11290
Deletion	Chr5	7049406	7049412	6
Deletion	Chr12	7405469	7405483	14
Deletion	Chr4	7456420	7456424	4
Deletion	Chr10	7745939	7745952	13
Deletion	Chr10	11185589	11185592	3
Deletion	Chr7	12223446	12235672	12226
Deletion	Chr9	12775966	12775976	10
Deletion	Chr10	13219857	13220825	968	LOC_Os10g25550
Deletion	Chr4	13239551	13239555	4
Deletion	Chr9	15626526	15626528	2
Deletion	Chr12	16113619	16113620	1
Deletion	Chr7	16764910	16765282	372	LOC_Os07g28640
Deletion	Chr2	17011350	17011361	11
Deletion	Chr2	17652639	17652654	15
Deletion	Chr10	18560388	18560397	9
Deletion	Chr1	18643626	18644554	928
Deletion	Chr9	22005595	22005596	1
Deletion	Chr5	22245067	22245068	1
Deletion	Chr12	22330963	22330986	23
Deletion	Chr6	24242387	24242388	1	LOC_Os06g40660
Deletion	Chr1	24644997	24645005	8
Deletion	Chr6	28049940	28049947	7
Deletion	Chr4	32111842	32111843	1
Deletion	Chr1	33113608	33113610	2
Deletion	Chr1	33134236	33134238	2
Deletion	Chr1	38273550	38273572	22	LOC_Os01g65904
Deletion	Chr1	39286153	39286179	26

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	13350421	13350441	21
Insertion	Chr1	28746186	28746186	1
Insertion	Chr10	19526014	19526014	1
Insertion	Chr10	23159606	23159606	1	LOC_Os10g42960
Insertion	Chr2	11979993	11979993	1
Insertion	Chr2	33915860	33915860	1
Insertion	Chr2	73997	73997	1
Insertion	Chr3	23983568	23983623	56
Insertion	Chr3	25240951	25240994	44
Insertion	Chr4	16987155	16987155	1
Insertion	Chr4	20708502	20708561	60	LOC_Os04g34170
Insertion	Chr4	5180225	5180225	1
Insertion	Chr5	29605813	29605848	36
Insertion	Chr6	17302769	17302769	1
Insertion	Chr6	19211692	19211692	1	LOC_Os06g33000
Insertion	Chr8	8303248	8303248	1
Insertion	Chr9	9986797	9986797	1

Inversions: 9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	7280350	8421901	LOC_Os06g13240
Inversion	Chr10	7657349	8035418	LOC_Os10g15240
Inversion	Chr10	8002768	8035420	LOC_Os10g15240
Inversion	Chr6	15684136	15736581	2
Inversion	Chr6	15684162	15736579	2
Inversion	Chr1	24291729	24379949
Inversion	Chr1	26254236	26492052	LOC_Os01g46169
Inversion	Chr1	26461997	26492051	LOC_Os01g46510
Inversion	Chr7	26635307	27772745	LOC_Os07g44640

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	5717103	Chr10	17345918	LOC_Os10g33104
Translocation	Chr11	6225754	Chr9	14083408	LOC_Os11g11240
Translocation	Chr6	7280321	Chr1	37383461	LOC_Os06g13240
Translocation	Chr10	17341675	Chr1	24291745
Translocation	Chr10	17345281	Chr1	24379957
Translocation	Chr10	17347010	Chr1	18643645	LOC_Os10g33104
Translocation	Chr6	21891937	Chr1	26254225	LOC_Os01g46169
Translocation	Chr6	21891940	Chr1	26251115	LOC_Os01g46169

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