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Mutant Information

Mutant Name	FN1482-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1482-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	13871204	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g26610
SBS	Chr10	7021793	A-T	HET	INTERGENIC
SBS	Chr11	21911792	C-T	HET	INTERGENIC
SBS	Chr12	19401083	T-C	HET	INTERGENIC
SBS	Chr12	7519555	T-A	Homo	INTERGENIC
SBS	Chr2	19275788	C-T	Homo	INTERGENIC
SBS	Chr2	23187417	C-G	HET	INTERGENIC
SBS	Chr2	2904505	T-C	HET	UTR_3_PRIME
SBS	Chr3	17727896	A-G	HET	INTRON
SBS	Chr3	25951403	T-C	HET	INTERGENIC
SBS	Chr4	21110359	T-G	HET	INTERGENIC
SBS	Chr4	22160088	T-C	HET	INTERGENIC
SBS	Chr4	6413994	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g11690
SBS	Chr5	14709743	G-A	HET	INTRON
SBS	Chr5	17006099	T-C	Homo	INTERGENIC
SBS	Chr6	15330641	A-G	Homo	INTRON
SBS	Chr7	12901075	C-T	HET	INTERGENIC

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	141782	141783	1	LOC_Os04g01190
Deletion	Chr5	1163216	1163221	5
Deletion	Chr12	2318517	2318522	5
Deletion	Chr3	3588160	3588166	6	LOC_Os03g07030
Deletion	Chr8	4168183	4168189	6	LOC_Os08g07420
Deletion	Chr6	5766072	5766073	1
Deletion	Chr7	6023301	6023317	16
Deletion	Chr12	6891455	6891456	1
Deletion	Chr9	7643001	7741000	98000	14
Deletion	Chr10	9353698	9353974	276	LOC_Os10g18400
Deletion	Chr12	10114498	10114499	1
Deletion	Chr1	10166662	10166664	2
Deletion	Chr11	11008411	11008412	1
Deletion	Chr9	11418253	11418257	4	LOC_Os09g19136
Deletion	Chr2	13830233	13830251	18
Deletion	Chr2	13877962	13877974	12
Deletion	Chr4	15436870	15436875	5
Deletion	Chr8	16847453	16847464	11
Deletion	Chr11	17494659	17494779	120
Deletion	Chr2	17506661	17506667	6
Deletion	Chr2	17965565	17965567	2
Deletion	Chr6	18046132	18046133	1
Deletion	Chr7	18588051	18588052	1
Deletion	Chr1	20005720	20005735	15	LOC_Os01g36170
Deletion	Chr2	20681751	20681757	6
Deletion	Chr2	21781935	21781938	3
Deletion	Chr12	22328689	22328694	5	LOC_Os12g36490
Deletion	Chr8	22554550	22554557	7
Deletion	Chr11	25830057	25830060	3
Deletion	Chr1	26214980	26214981	1	LOC_Os01g46110
Deletion	Chr4	26797021	26797022	1
Deletion	Chr2	27297581	27297590	9	LOC_Os02g45040
Deletion	Chr2	33890976	33890983	7

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	25276173	25276174	2
Insertion	Chr10	8216364	8216364	1
Insertion	Chr11	6791231	6791232	2
Insertion	Chr12	621465	621466	2
Insertion	Chr12	6891541	6891559	19
Insertion	Chr4	11634159	11634159	1
Insertion	Chr4	2929504	2929532	29
Insertion	Chr4	8745059	8745061	3
Insertion	Chr5	2699887	2699887	1
Insertion	Chr7	26375264	26375264	1
Insertion	Chr7	28750318	28750319	2
Insertion	Chr7	8777128	8777129	2
Insertion	Chr8	17643067	17643067	1
Insertion	Chr8	20150080	20150137	58
Insertion	Chr8	24677030	24677030	1
Insertion	Chr8	8657538	8657538	1
Insertion	Chr9	11722253	11722254	2	LOC_Os09g19600

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	8588567	9262180
Inversion	Chr7	9036360	10520895	LOC_Os07g15600
Inversion	Chr7	10011649	10520874

No Translocation

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