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Mutant Information

Mutant Name	FN1483-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1483-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	167575	C-A	Homo	INTERGENIC
SBS	Chr1	167576	C-A	Homo	INTERGENIC
SBS	Chr1	10884101	G-A	HET	INTERGENIC
SBS	Chr1	36953560	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g63710
SBS	Chr2	11585332	G-A	HET	INTERGENIC
SBS	Chr2	28453116	A-G	HET	INTERGENIC
SBS	Chr3	16253054	C-T	HET	INTERGENIC
SBS	Chr3	19574936	C-T	HET	INTERGENIC
SBS	Chr5	5029615	G-T	HET	INTERGENIC
SBS	Chr5	17181074	G-A	HET	INTERGENIC
SBS	Chr6	16660961	T-C	HET	INTERGENIC
SBS	Chr6	17217859	A-G	Homo	INTERGENIC
SBS	Chr6	25103038	T-G	Homo	INTERGENIC
SBS	Chr6	25513267	G-A	Homo	INTERGENIC
SBS	Chr6	25513268	C-A	Homo	INTERGENIC
SBS	Chr7	6543809	A-G	HET	INTERGENIC
SBS	Chr7	8437630	T-C	HET	INTERGENIC
SBS	Chr7	11580852	G-A	HET	INTERGENIC
SBS	Chr7	16158390	A-G	HET	INTRON
SBS	Chr7	18356650	C-A	Homo	INTERGENIC
SBS	Chr7	24056875	G-A	HET	INTERGENIC
SBS	Chr7	27261584	C-T	HET	INTERGENIC
SBS	Chr7	28061658	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g46950
SBS	Chr8	12191704	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g20300
SBS	Chr9	3789088	C-T	HET	INTERGENIC
SBS	Chr9	5564453	A-G	Homo	INTRON
SBS	Chr9	9263249	A-G	HET	INTERGENIC
SBS	Chr9	20857958	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g36180
SBS	Chr10	5861332	G-A	HET	INTERGENIC
SBS	Chr11	7587452	G-A	Homo	START_GAINED	LOC_Os11g13800
SBS	Chr11	11257689	G-A	HET	INTERGENIC
SBS	Chr11	15180057	G-A	HET	INTERGENIC
SBS	Chr12	620137	G-T	HET	INTERGENIC
SBS	Chr12	621440	G-C	HET	INTERGENIC
SBS	Chr12	621567	G-A	HET	INTERGENIC
SBS	Chr12	19710876	T-C	HET	INTERGENIC

Deletions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	798291	798294	3
Deletion	Chr9	1336025	1336032	7	LOC_Os09g02840
Deletion	Chr5	2081687	2081688	1
Deletion	Chr10	3836333	3836334	1
Deletion	Chr5	4305912	4307895	1983	LOC_Os05g07940
Deletion	Chr8	4772613	4772614	1
Deletion	Chr6	4971337	4971359	22
Deletion	Chr10	5770284	5770305	21
Deletion	Chr9	6133830	6133831	1	LOC_Os09g11040
Deletion	Chr5	6473006	6473016	10
Deletion	Chr6	8275783	8275788	5
Deletion	Chr10	10475371	10475373	2
Deletion	Chr5	10598267	10598274	7	LOC_Os05g18380
Deletion	Chr5	12229117	12229143	26
Deletion	Chr6	12622876	12622878	2
Deletion	Chr5	14269034	14269037	3
Deletion	Chr9	15021492	15021500	8
Deletion	Chr12	15242197	15242259	62
Deletion	Chr1	15823001	16528000	705000	114
Deletion	Chr10	17383291	17383293	2
Deletion	Chr7	18371149	18371150	1
Deletion	Chr10	19417147	19417152	5
Deletion	Chr8	20522199	20522200	1
Deletion	Chr11	20555879	20555880	1
Deletion	Chr8	21963866	21963867	1
Deletion	Chr7	24060029	24060034	5
Deletion	Chr7	24144354	24144355	1
Deletion	Chr3	25905481	25905482	1
Deletion	Chr12	26263711	26263753	42
Deletion	Chr2	26485163	26485166	3
Deletion	Chr12	26634447	26634448	1
Deletion	Chr3	27453001	27511000	58000	6
Deletion	Chr5	27764550	27764551	1
Deletion	Chr3	28357163	28357164	1
Deletion	Chr2	30174989	30175014	25
Deletion	Chr3	30312909	30312911	2
Deletion	Chr3	34819150	34819157	7	LOC_Os03g61330
Deletion	Chr3	36197599	36197600	1
Deletion	Chr1	42243698	42243711	13	LOC_Os01g72820

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	7821753	7821754	2
Insertion	Chr1	4916082	4916119	38
Insertion	Chr1	19605681	19605681	1
Insertion	Chr2	28012239	28012240	2
Insertion	Chr3	26446412	26446412	1	LOC_Os03g46740
Insertion	Chr5	18713063	18713063	1
Insertion	Chr6	3612404	3612404	1
Insertion	Chr7	11842361	11842412	52
Insertion	Chr9	13651559	13651566	8
Insertion	Chr9	19650944	19650944	1
Insertion	Chr10	2122302	2122303	2
Insertion	Chr10	3214150	3214150	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	17176720	17327794	LOC_Os05g29710
Inversion	Chr5	17613288	18070740	LOC_Os05g30380

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	4242939	Chr3	21493781	LOC_Os03g38720
Translocation	Chr7	5056037	Chr4	31535156	LOC_Os04g52940
Translocation	Chr7	5056177	Chr4	31535149	LOC_Os04g52940
Translocation	Chr5	5788524	Chr3	34638199	2
Translocation	Chr5	5788534	Chr3	34638204	2

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