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Mutant Information

Mutant Name	FN1484-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1484-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13642546	T-C	Homo	INTERGENIC
SBS	Chr1	25374124	T-A	HET	INTERGENIC
SBS	Chr1	35752918	T-C	HET	SYNONYMOUS_CODING
SBS	Chr1	37564965	C-T	HET	INTERGENIC
SBS	Chr2	1537019	C-T	Homo	INTERGENIC
SBS	Chr2	14609800	G-A	Homo	INTERGENIC
SBS	Chr2	23145388	A-G	Homo	INTERGENIC
SBS	Chr2	23415048	A-T	HET	INTERGENIC
SBS	Chr2	29444521	T-G	HET	INTERGENIC
SBS	Chr3	7213140	G-A	HET	INTRON
SBS	Chr3	9863238	T-C	HET	INTERGENIC
SBS	Chr3	13563957	A-T	HET	INTERGENIC
SBS	Chr4	16596334	G-A	HET	INTERGENIC
SBS	Chr4	17227246	C-T	HET	INTERGENIC
SBS	Chr4	18596196	C-T	HET	INTERGENIC
SBS	Chr4	34736804	A-T	HET	INTERGENIC
SBS	Chr5	681710	C-T	HET	INTERGENIC
SBS	Chr5	5733040	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g10540
SBS	Chr5	8332578	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g14640
SBS	Chr5	8332579	A-T	HET	SYNONYMOUS_CODING
SBS	Chr6	474483	A-G	HET	INTERGENIC
SBS	Chr6	5524165	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g10620
SBS	Chr6	8937053	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g15750
SBS	Chr6	28917145	G-A	HET	INTERGENIC
SBS	Chr7	8097871	C-T	HET	INTERGENIC
SBS	Chr7	11442366	T-C	Homo	INTERGENIC
SBS	Chr7	13702283	C-T	Homo	INTERGENIC
SBS	Chr7	17358067	A-G	HET	INTERGENIC
SBS	Chr7	18846251	T-C	HET	INTERGENIC
SBS	Chr7	20370270	C-T	HET	INTERGENIC
SBS	Chr7	25544614	T-C	Homo	INTERGENIC
SBS	Chr9	3558922	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g07250
SBS	Chr9	5147195	T-G	HET	INTERGENIC
SBS	Chr9	9265043	C-A	HET	UTR_5_PRIME
SBS	Chr9	12081052	T-C	HET	INTRON
SBS	Chr10	6353710	G-A	HET	INTERGENIC
SBS	Chr10	18365641	G-T	HET	INTRON
SBS	Chr10	18365643	A-T	HET	INTRON
SBS	Chr11	1144673	A-T	Homo	INTERGENIC
SBS	Chr11	11327156	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g19660
SBS	Chr11	15996314	A-T	Homo	INTERGENIC
SBS	Chr11	15996353	A-G	Homo	INTERGENIC
SBS	Chr11	24811165	A-T	HET	INTERGENIC
SBS	Chr12	24242495	C-T	HET	INTERGENIC

Deletions: 38

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	983508	983510	2
Deletion	Chr1	2606462	2606543	81	LOC_Os01g05500
Deletion	Chr8	5033897	5033898	1
Deletion	Chr8	5116617	5116630	13	LOC_Os08g08820
Deletion	Chr5	5433045	5433052	7	LOC_Os05g09620
Deletion	Chr10	5709993	5709994	1
Deletion	Chr2	6427637	6427638	1
Deletion	Chr3	7363994	7364005	11
Deletion	Chr4	7839598	7839599	1
Deletion	Chr6	8481126	8481127	1
Deletion	Chr7	8885925	8885932	7
Deletion	Chr6	9648498	9648503	5
Deletion	Chr1	10376028	10376036	8	LOC_Os01g18460
Deletion	Chr5	11887886	11887893	7
Deletion	Chr6	12017739	12017740	1
Deletion	Chr4	12565220	12565222	2
Deletion	Chr5	13045556	13045557	1
Deletion	Chr4	14101714	14101730	16
Deletion	Chr2	14191910	14191911	1
Deletion	Chr6	15957654	15957655	1	LOC_Os06g28100
Deletion	Chr9	16376462	16376474	12
Deletion	Chr11	16563744	16563745	1
Deletion	Chr10	16997563	16997582	19
Deletion	Chr2	17158897	17158898	1	LOC_Os02g28980
Deletion	Chr4	17920001	18014000	94000	14
Deletion	Chr10	18337046	18337055	9	LOC_Os10g34390
Deletion	Chr5	18469990	18470001	11
Deletion	Chr6	19914425	19914426	1
Deletion	Chr6	20028654	20028656	2
Deletion	Chr5	20199305	20199347	42
Deletion	Chr2	22522669	22522677	8
Deletion	Chr9	22942001	23013000	71000	10
Deletion	Chr3	23630340	23630341	1	LOC_Os03g42464
Deletion	Chr5	24018694	24018697	3
Deletion	Chr5	25180291	25180295	4	LOC_Os05g43280
Deletion	Chr7	26410716	26410717	1
Deletion	Chr1	28581572	28581577	5
Deletion	Chr5	29074293	29074294	1

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	2981339	2981342	4	LOC_Os10g05900
Insertion	Chr2	5398468	5398468	1
Insertion	Chr2	19305919	19305943	25
Insertion	Chr4	34970872	34970947	76
Insertion	Chr5	4452219	4452219	1
Insertion	Chr5	9621118	9621133	16
Insertion	Chr5	28034317	28034317	1
Insertion	Chr8	3535197	3535197	1	LOC_Os08g06370
Insertion	Chr9	7196896	7196897	2
Insertion	Chr9	18262261	18262261	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	11651642	12054298	LOC_Os03g20550
Inversion	Chr3	12028893	12054324
Inversion	Chr8	27300756	27555057	LOC_Os08g43560
Inversion	Chr8	27300808	27555084	LOC_Os08g43560
Inversion	Chr3	32892831	33329968	LOC_Os03g58530

No Translocation

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