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Mutant Information

Mutant Name	FN1485-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1485-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25964693	T-A	HET	INTERGENIC
SBS	Chr1	36511140	A-G	HET	INTERGENIC
SBS	Chr2	12663173	T-C	HET	INTERGENIC
SBS	Chr2	13424671	C-T	HET	INTRON
SBS	Chr2	16658256	C-A	HET	INTERGENIC
SBS	Chr2	20902565	G-A	HET	INTRON
SBS	Chr2	26186571	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g43390
SBS	Chr3	2025714	C-T	HET	INTERGENIC
SBS	Chr3	7061301	C-T	Homo	INTERGENIC
SBS	Chr4	523484	G-C	Homo	INTRON
SBS	Chr4	10835377	A-G	HET	INTERGENIC
SBS	Chr4	14220223	C-G	Homo	INTERGENIC
SBS	Chr4	16294535	C-T	Homo	INTERGENIC
SBS	Chr5	9466846	G-A	Homo	INTRON
SBS	Chr5	15150262	A-T	Homo	INTERGENIC
SBS	Chr6	14491635	T-C	HET	SYNONYMOUS_CODING
SBS	Chr6	26875237	A-T	Homo	INTERGENIC
SBS	Chr7	18580886	A-T	HET	INTRON
SBS	Chr7	23702266	G-T	HET	INTERGENIC
SBS	Chr7	27698678	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g46410
SBS	Chr9	16536125	T-C	Homo	INTRON
SBS	Chr9	20706208	A-G	HET	INTERGENIC
SBS	Chr10	8128051	A-G	HET	INTERGENIC
SBS	Chr10	10613982	A-T	Homo	INTERGENIC
SBS	Chr10	11646154	C-T	Homo	INTERGENIC
SBS	Chr10	12173698	G-A	Homo	INTERGENIC
SBS	Chr10	18019843	G-A	HET	INTERGENIC
SBS	Chr11	12881726	C-G	HET	INTRON
SBS	Chr11	16715491	G-A	HET	INTERGENIC
SBS	Chr11	24301488	C-G	HET	INTERGENIC
SBS	Chr12	14622825	T-C	HET	INTERGENIC

Deletions: 41

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	622989	622990	1	LOC_Os05g02090
Deletion	Chr6	1174048	1174055	7	LOC_Os06g03150
Deletion	Chr2	1794317	1794318	1
Deletion	Chr1	1931805	1931811	6	LOC_Os01g04330
Deletion	Chr5	2120575	2120626	51
Deletion	Chr9	2362689	2362690	1
Deletion	Chr6	2511006	2511017	11
Deletion	Chr2	2697612	2697620	8	LOC_Os02g05560
Deletion	Chr2	2699381	2699408	27
Deletion	Chr2	3753670	3753682	12
Deletion	Chr6	3974395	3974413	18
Deletion	Chr10	4601260	4601270	10
Deletion	Chr6	4656187	4656188	1
Deletion	Chr3	4994884	4994887	3
Deletion	Chr9	5185510	5185520	10
Deletion	Chr10	6411944	6411945	1
Deletion	Chr11	7455997	7455998	1
Deletion	Chr8	7796499	7796501	2
Deletion	Chr7	9761760	9761764	4	LOC_Os07g16630
Deletion	Chr10	9932907	9932912	5
Deletion	Chr12	11437001	11437002	1	LOC_Os12g19610
Deletion	Chr6	12146700	12146701	1
Deletion	Chr11	13048076	13048077	1
Deletion	Chr3	13209242	13209243	1
Deletion	Chr12	13637837	13637842	5
Deletion	Chr3	15377830	15377840	10
Deletion	Chr1	16788197	16788198	1
Deletion	Chr3	18737352	18737355	3	LOC_Os03g32700
Deletion	Chr9	19804762	19804767	5
Deletion	Chr2	19895587	19895591	4	LOC_Os02g33460
Deletion	Chr1	22054366	22054369	3
Deletion	Chr11	22675902	22675903	1	LOC_Os11g38300
Deletion	Chr11	22760124	22760130	6	LOC_Os11g38430
Deletion	Chr11	22990276	22990280	4
Deletion	Chr6	25605236	25605241	5
Deletion	Chr2	26400946	26400956	10
Deletion	Chr11	27132145	27132146	1	LOC_Os11g44830
Deletion	Chr4	28796144	28796157	13
Deletion	Chr4	31397237	31397238	1
Deletion	Chr1	38515221	38517856	2635	2
Deletion	Chr1	39184199	39184213	14

Insertions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	28906379	28906380	2
Insertion	Chr7	11742443	11742444	2
Insertion	Chr1	7232157	7232172	16
Insertion	Chr1	12149114	12149115	2
Insertion	Chr1	36195277	36195277	1
Insertion	Chr2	25342700	25342700	1
Insertion	Chr2	29882074	29882074	1	LOC_Os02g48840
Insertion	Chr3	6934637	6934640	4
Insertion	Chr3	16407470	16407491	22
Insertion	Chr5	12443136	12443199	64
Insertion	Chr7	1380477	1380478	2	LOC_Os07g03440
Insertion	Chr7	16854341	16854352	12
Insertion	Chr8	14911622	14911628	7
Insertion	Chr9	1173584	1173589	6
Insertion	Chr9	10751724	10751732	9	LOC_Os09g17580
Insertion	Chr10	20534507	20534509	3
Insertion	Chr11	8055177	8055217	41
Insertion	Chr11	8853166	8853166	1
Insertion	Chr11	24152342	24152342	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	5884767	6034043	LOC_Os09g10950
Inversion	Chr9	5913452	6034058	LOC_Os09g10950
Inversion	Chr3	15397078	15933868	2
Inversion	Chr9	21137577	21249821

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	2570542	Chr1	8218343
Translocation	Chr6	5352953	Chr1	38516388
Translocation	Chr6	5352968	Chr1	38515235
Translocation	Chr3	11981179	Chr1	38517891	LOC_Os01g66320
Translocation	Chr3	15933872	Chr1	38516352	LOC_Os03g27780

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