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Mutant Information

Variant Information

Single base substitutions: 15

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18952282	C-T	Homo	INTRON
SBS	Chr1	20592598	C-T	Homo	INTERGENIC
SBS	Chr1	23955555	A-T	Homo	SYNONYMOUS_CODING
SBS	Chr1	4064264	T-A	HET	UTR_5_PRIME
SBS	Chr10	7904600	C-G	Homo	INTERGENIC
SBS	Chr11	10444927	A-T	HET	INTERGENIC
SBS	Chr11	6279208	G-A	HET	INTERGENIC
SBS	Chr2	27730411	G-A	Homo	INTERGENIC
SBS	Chr3	18700891	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g32650
SBS	Chr4	33974899	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g56990
SBS	Chr6	17416268	G-A	Homo	INTRON
SBS	Chr6	18110050	C-G	HET	INTRON
SBS	Chr6	803599	G-A	HET	INTERGENIC
SBS	Chr8	12012720	G-A	HET	INTERGENIC
SBS	Chr9	7034405	C-T	HET	INTERGENIC

Deletions: 41

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1158764	1158765	1
Deletion	Chr1	1346893	1346895	2
Deletion	Chr4	1562404	1562410	6	LOC_Os04g03579
Deletion	Chr3	1568946	1568948	2	LOC_Os03g03590
Deletion	Chr7	1841220	1841221	1
Deletion	Chr9	5155636	5155640	4
Deletion	Chr11	5432253	5432255	2
Deletion	Chr9	5999152	5999173	21
Deletion	Chr8	7181719	7181720	1
Deletion	Chr8	7391381	7391382	1
Deletion	Chr9	7429361	7429368	7
Deletion	Chr5	7693354	7693356	2
Deletion	Chr9	7768761	7768764	3
Deletion	Chr1	8000609	8000610	1
Deletion	Chr5	8377505	8377508	3
Deletion	Chr4	9988311	9988316	5
Deletion	Chr6	10247645	10247646	1
Deletion	Chr1	10550916	10550926	10	LOC_Os01g18710
Deletion	Chr11	12116006	12121053	5047
Deletion	Chr10	13174333	13174336	3
Deletion	Chr2	13607936	13607937	1
Deletion	Chr10	13666021	13666023	2
Deletion	Chr10	14582535	14582537	2
Deletion	Chr9	15903475	15903483	8
Deletion	Chr7	16461251	16461252	1
Deletion	Chr2	16641400	16641402	2
Deletion	Chr1	16857215	16857216	1
Deletion	Chr12	17873985	17873986	1
Deletion	Chr7	17941359	17941361	2
Deletion	Chr9	18353780	18353783	3
Deletion	Chr2	18849444	18849445	1	LOC_Os02g31910
Deletion	Chr8	20093904	20093908	4	LOC_Os08g32450
Deletion	Chr3	21019254	21019262	8
Deletion	Chr9	21678001	22055000	377000	66
Deletion	Chr3	21993727	21993734	7
Deletion	Chr1	23871836	23871845	9
Deletion	Chr2	26525125	26525132	7	LOC_Os02g43940
Deletion	Chr7	26857944	26858027	83
Deletion	Chr1	27155565	27155581	16	LOC_Os01g47510
Deletion	Chr3	32667530	32667535	5
Deletion	Chr3	36255974	36262100	6126	LOC_Os03g64170

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	23003746	23003746	1
Insertion	Chr11	27749721	27749721	1
Insertion	Chr12	3823673	3823673	1
Insertion	Chr12	5559796	5559800	5
Insertion	Chr2	31879942	31879942	1	LOC_Os02g52090
Insertion	Chr4	24456019	24456057	39	LOC_Os04g41220
Insertion	Chr5	22246987	22246989	3
Insertion	Chr6	25260029	25260029	1
Insertion	Chr7	12674433	12674434	2

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	6117831	7764553	LOC_Os09g11020
Inversion	Chr9	6200487	7764554
Inversion	Chr5	14207031	15142218	LOC_Os05g26040
Inversion	Chr5	15096885	15136892	2
Inversion	Chr9	19253151	22055212	LOC_Os09g38330
Inversion	Chr5	21789146	21965457	LOC_Os05g37520
Inversion	Chr5	21789162	21965453	LOC_Os05g37520
Inversion	Chr5	25731910	26053352	LOC_Os05g44810

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1386438	Chr3	36261811
Translocation	Chr12	1386446	Chr3	36255983
Translocation	Chr6	3372778	Chr3	36261822
Translocation	Chr6	3372781	Chr3	36262140
Translocation	Chr9	6117839	Chr5	706256	LOC_Os09g11020
Translocation	Chr9	6200460	Chr5	706258
Translocation	Chr12	27405758	Chr5	29716727

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