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Mutant Information

Mutant Name	FN1490-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1490-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect
SBS	Chr1	11662043	C-T	Homo	INTERGENIC
SBS	Chr1	27461801	A-T	Homo	INTRON
SBS	Chr2	2654373	A-G	HET	INTERGENIC
SBS	Chr2	23018821	A-T	HET	INTERGENIC
SBS	Chr3	28043010	G-A	Homo	INTERGENIC
SBS	Chr4	10490997	A-G	HET	SYNONYMOUS_CODING
SBS	Chr4	14264655	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr5	9910233	C-T	HET	INTERGENIC
SBS	Chr5	14360425	C-T	Homo	INTERGENIC
SBS	Chr5	26356623	C-A	HET	INTERGENIC
SBS	Chr6	9775567	A-T	Homo	INTERGENIC
SBS	Chr7	9556906	A-G	HET	INTERGENIC
SBS	Chr7	20388284	A-T	Homo	INTRON
SBS	Chr8	8253808	T-A	HET	INTERGENIC
SBS	Chr9	4623768	A-C	HET	INTERGENIC
SBS	Chr10	5072434	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	17547220	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr10	21650102	A-C	Homo	INTERGENIC
SBS	Chr11	4748395	A-T	HET	INTERGENIC
SBS	Chr11	7917114	T-G	HET	UTR_3_PRIME
SBS	Chr12	2099729	C-T	HET	INTERGENIC
SBS	Chr12	14114810	C-T	HET	INTERGENIC
SBS	Chr12	15473060	C-T	HET	UTR_3_PRIME

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	498148	498149	1	LOC_Os07g01840
Deletion	Chr4	7848429	7848431	2
Deletion	Chr1	8033273	8033274	1
Deletion	Chr3	8915796	8915835	39
Deletion	Chr4	9939284	9939294	10
Deletion	Chr3	10096723	10096730	7
Deletion	Chr9	14123518	14123520	2
Deletion	Chr10	14602334	14602338	4
Deletion	Chr11	14966506	14966507	1
Deletion	Chr4	15219036	15219037	1
Deletion	Chr12	20226342	20226343	1
Deletion	Chr6	21503903	21522448	18545	3
Deletion	Chr4	23143265	23143266	1
Deletion	Chr7	24960856	24960965	109
Deletion	Chr2	25121692	25121694	2
Deletion	Chr3	27161971	27161979	8
Deletion	Chr7	27210180	27210196	16	LOC_Os07g45590
Deletion	Chr3	32331799	32331803	4
Deletion	Chr2	35484242	35484243	1
Deletion	Chr1	36525436	36525437	1

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	26757684	26757689	6	LOC_Os12g43090
Insertion	Chr2	7458562	7458566	5
Insertion	Chr1	10730862	10730862	1
Insertion	Chr2	2291130	2291130	1
Insertion	Chr2	9635699	9635714	16
Insertion	Chr2	9881566	9881569	4
Insertion	Chr2	26485508	26485516	9
Insertion	Chr3	15138764	15138787	24	LOC_Os03g26510
Insertion	Chr3	15704518	15704518	1
Insertion	Chr3	21085651	21085651	1
Insertion	Chr4	25427569	25427571	3
Insertion	Chr4	26835325	26835354	30
Insertion	Chr8	4091344	4091360	17
Insertion	Chr8	12722241	12722291	51
Insertion	Chr10	17139369	17139370	2
Insertion	Chr10	19942360	19942360	1
Insertion	Chr11	4012074	4012075	2
Insertion	Chr11	28236398	28236469	72	LOC_Os11g46980

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	3503543	4193105	LOC_Os06g08500
Inversion	Chr7	10047505	10499038	LOC_Os07g17080
Inversion	Chr6	14448406	17295874

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	10499044	Chr6	17295892

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