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Mutant Information

Mutant Name	FN1492-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1492-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6447656	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g11900
SBS	Chr1	15793169	T-G	Homo	INTRON
SBS	Chr1	21513536	G-C	HET	INTERGENIC
SBS	Chr1	21568547	G-A	HET	INTERGENIC
SBS	Chr2	2806361	G-A	HET	INTRON
SBS	Chr2	6579241	T-C	HET	INTRON
SBS	Chr2	15018208	C-T	HET	INTERGENIC
SBS	Chr3	4161295	G-A	HET	INTERGENIC
SBS	Chr3	22767835	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	28501288	G-A	HET	INTRON
SBS	Chr3	29692433	C-T	HET	INTERGENIC
SBS	Chr3	32893619	G-C	Homo	INTERGENIC
SBS	Chr4	1807749	C-T	Homo	INTERGENIC
SBS	Chr4	3932240	C-T	HET	INTERGENIC
SBS	Chr4	9704362	A-G	HET	INTERGENIC
SBS	Chr4	12733642	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g22490
SBS	Chr4	18273047	T-C	HET	INTERGENIC
SBS	Chr4	27014057	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g45665
SBS	Chr6	7270723	A-G	HET	INTERGENIC
SBS	Chr6	9272466	T-A	HET	SYNONYMOUS_CODING
SBS	Chr6	27545017	C-T	HET	INTERGENIC
SBS	Chr6	29407138	A-C	HET	INTERGENIC
SBS	Chr6	30901863	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g51084
SBS	Chr7	8108881	T-C	HET	INTERGENIC
SBS	Chr7	9643610	A-G	HET	SYNONYMOUS_CODING
SBS	Chr7	19006643	G-A	HET	INTRON
SBS	Chr8	252852	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g01390
SBS	Chr8	1303493	C-T	Homo	INTRON
SBS	Chr8	11433358	T-G	Homo	INTERGENIC
SBS	Chr8	17367275	A-T	Homo	INTERGENIC
SBS	Chr8	27022053	T-C	Homo	INTRON
SBS	Chr9	239871	C-A	HET	SYNONYMOUS_CODING
SBS	Chr9	3296347	G-A	HET	INTERGENIC
SBS	Chr9	4107808	C-G	HET	INTERGENIC
SBS	Chr9	10455243	A-C	HET	INTERGENIC
SBS	Chr9	16885720	G-A	Homo	INTERGENIC
SBS	Chr10	1081912	C-T	HET	INTERGENIC
SBS	Chr10	6469315	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g11702
SBS	Chr10	9391925	G-A	HET	INTERGENIC
SBS	Chr10	19582727	T-C	HET	INTERGENIC
SBS	Chr11	3997403	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g07840
SBS	Chr11	9108404	C-T	HET	INTERGENIC
SBS	Chr11	11408294	G-C	HET	INTERGENIC
SBS	Chr12	8878729	A-G	Homo	INTERGENIC
SBS	Chr12	12953484	T-C	Homo	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1207706	1207717	11
Deletion	Chr4	5149112	5149561	449
Deletion	Chr2	5675331	5675343	12
Deletion	Chr1	6513068	6513083	15	LOC_Os01g11952
Deletion	Chr1	8467896	8467925	29
Deletion	Chr5	12334220	12334226	6	LOC_Os05g20970
Deletion	Chr7	15654691	15654692	1
Deletion	Chr4	16184682	16184685	3
Deletion	Chr11	16404119	16404127	8
Deletion	Chr6	16717076	16717077	1	LOC_Os06g29280
Deletion	Chr7	17415620	17415629	9
Deletion	Chr7	18300772	18300784	12	LOC_Os07g30910
Deletion	Chr11	19333197	19333213	16	LOC_Os11g32720
Deletion	Chr12	19500573	19500574	1
Deletion	Chr2	21595904	21595917	13
Deletion	Chr2	25156094	25156113	19
Deletion	Chr5	25699489	25699505	16
Deletion	Chr3	27968356	27968357	1
Deletion	Chr7	28609396	28609397	1
Deletion	Chr6	29643032	29643082	50
Deletion	Chr1	30001195	30001197	2
Deletion	Chr2	35847890	35847892	2

Insertions: 25

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	30567313	30567314	2
Insertion	Chr7	18248068	18248069	2
Insertion	Chr7	19025978	19025979	2
Insertion	Chr1	31904143	31904143	1
Insertion	Chr2	19600930	19600930	1
Insertion	Chr2	20656106	20656106	1
Insertion	Chr2	34406955	34406955	1
Insertion	Chr3	23807679	23807680	2
Insertion	Chr3	34460333	34460333	1
Insertion	Chr4	12945229	12945273	45
Insertion	Chr4	19213661	19213661	1
Insertion	Chr5	23349162	23349163	2
Insertion	Chr6	4289726	4289730	5
Insertion	Chr6	18062876	18062876	1
Insertion	Chr6	28897523	28897523	1
Insertion	Chr8	10173562	10173563	2
Insertion	Chr9	5808924	5808925	2
Insertion	Chr9	21045329	21045334	6
Insertion	Chr10	2971076	2971076	1
Insertion	Chr10	16411063	16411072	10
Insertion	Chr11	15102414	15102441	28
Insertion	Chr11	16919102	16919103	2
Insertion	Chr11	19405121	19405121	1
Insertion	Chr11	23251308	23251367	60
Insertion	Chr12	2640759	2640759	1

No Inversion

No Translocation

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