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Mutant Information

Mutant Name	FN1493-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1493-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13733067	G-T	HET	INTERGENIC
SBS	Chr1	18808172	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g34140
SBS	Chr1	18808174	T-A	HET	SYNONYMOUS_CODING
SBS	Chr1	20335370	C-T	HET	INTERGENIC
SBS	Chr2	12456156	A-G	HET	INTERGENIC
SBS	Chr2	13232835	G-A	HET	INTERGENIC
SBS	Chr2	14403568	A-C	HET	INTERGENIC
SBS	Chr2	15875115	A-T	HET	INTRON
SBS	Chr3	15762872	C-T	HET	INTERGENIC
SBS	Chr3	19556062	G-C	HET	INTERGENIC
SBS	Chr3	21251487	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	23687987	G-A	Homo	INTERGENIC
SBS	Chr3	29473394	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g51520
SBS	Chr4	11973118	G-T	HET	INTERGENIC
SBS	Chr4	23103260	T-A	HET	INTERGENIC
SBS	Chr4	23103268	G-A	HET	INTERGENIC
SBS	Chr4	31265976	T-C	HET	INTRON
SBS	Chr5	3333524	G-T	Homo	INTRON
SBS	Chr5	11478810	T-A	HET	INTERGENIC
SBS	Chr5	14391265	T-A	HET	INTERGENIC
SBS	Chr5	17183195	T-A	HET	INTERGENIC
SBS	Chr5	20209443	C-T	HET	INTERGENIC
SBS	Chr5	21897193	A-T	HET	INTERGENIC
SBS	Chr6	3307150	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	14145947	C-A	HET	INTERGENIC
SBS	Chr6	16196322	A-T	HET	INTERGENIC
SBS	Chr6	17094049	A-G	HET	INTERGENIC
SBS	Chr7	15120992	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	4492783	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g07950
SBS	Chr8	23152756	G-T	HET	INTERGENIC
SBS	Chr8	26971936	G-A	HET	INTRON
SBS	Chr9	5495450	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g10080
SBS	Chr9	14756658	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	20938434	T-A	HET	INTERGENIC
SBS	Chr11	22901329	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g38630
SBS	Chr12	2016575	G-A	HET	INTERGENIC
SBS	Chr12	4077022	A-T	HET	INTERGENIC
SBS	Chr12	7597993	A-G	HET	INTERGENIC
SBS	Chr12	10271759	G-T	Homo	INTERGENIC
SBS	Chr12	20075554	T-C	HET	INTERGENIC
SBS	Chr12	26150043	G-A	HET	INTERGENIC

Deletions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	331521	331529	8
Deletion	Chr12	633387	633393	6
Deletion	Chr10	1698001	1698003	2
Deletion	Chr12	2346244	2346246	2
Deletion	Chr5	3330581	3330582	1
Deletion	Chr12	3649302	3649303	1
Deletion	Chr1	4733282	4744864	11582	2
Deletion	Chr1	5354901	5354906	5
Deletion	Chr3	6760144	6760147	3
Deletion	Chr4	7945586	7945587	1	LOC_Os04g14180
Deletion	Chr8	9162053	9162066	13
Deletion	Chr10	10039513	10039514	1
Deletion	Chr2	10775809	10775816	7
Deletion	Chr12	13047432	13047442	10
Deletion	Chr7	13460354	13460356	2
Deletion	Chr5	16007687	16007688	1	LOC_Os05g27520
Deletion	Chr5	17176986	17176991	5	LOC_Os05g29710
Deletion	Chr11	17519186	17519188	2
Deletion	Chr7	18141956	18141959	3	LOC_Os07g30660
Deletion	Chr4	20573638	20573639	1
Deletion	Chr7	20931071	20934029	2958	2
Deletion	Chr9	20938571	20938584	13	LOC_Os09g36280
Deletion	Chr5	21890335	21890348	13	LOC_Os05g37410
Deletion	Chr2	22751141	22751144	3
Deletion	Chr1	22859853	22859871	18
Deletion	Chr3	22899867	22899869	2
Deletion	Chr4	22944822	22954818	9996	2
Deletion	Chr5	23197567	23197568	1
Deletion	Chr7	23312090	23312091	1
Deletion	Chr12	25085692	25085699	7	LOC_Os12g40540
Deletion	Chr12	25086237	25086245	8
Deletion	Chr3	25224795	25224799	4
Deletion	Chr4	25691245	25691246	1
Deletion	Chr8	26920127	26920145	18	LOC_Os08g42590
Deletion	Chr1	27040791	27040792	1
Deletion	Chr8	28022524	28022552	28
Deletion	Chr4	30084061	30084062	1
Deletion	Chr4	30588369	30588389	20
Deletion	Chr4	35074674	35074677	3	LOC_Os04g58960

Insertions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	7859374	7859374	1
Insertion	Chr4	9502954	9502954	1	LOC_Os04g17340
Insertion	Chr2	13562050	13562050	1
Insertion	Chr2	34631106	34631106	1
Insertion	Chr3	16310804	16310804	1
Insertion	Chr4	7859376	7859376	1
Insertion	Chr5	1815696	1815770	75
Insertion	Chr7	11179597	11179673	77
Insertion	Chr7	20709694	20709727	34
Insertion	Chr7	26008432	26008461	30
Insertion	Chr7	28420090	28420090	1
Insertion	Chr8	4812510	4812518	9
Insertion	Chr8	23506989	23506990	2
Insertion	Chr9	604739	604750	12
Insertion	Chr10	2604356	2604356	1
Insertion	Chr10	4300140	4300153	14
Insertion	Chr11	2326546	2326623	78
Insertion	Chr11	12044278	12044328	51
Insertion	Chr12	2950170	2950170	1
Insertion	Chr12	3025678	3025680	3
Insertion	Chr12	8073536	8073536	1
Insertion	Chr12	17883583	17883583	1

No Inversion

No Translocation

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