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Mutant Information

Mutant Name	FN1494-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1494-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15429282	G-C	HET	INTRON
SBS	Chr1	15939713	T-C	HET	INTERGENIC
SBS	Chr1	34335478	C-A	Homo	INTERGENIC
SBS	Chr1	34335479	C-A	Homo	INTERGENIC
SBS	Chr2	32010847	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g52280
SBS	Chr2	32641941	G-A	HET	INTERGENIC
SBS	Chr2	33676719	G-A	HET	INTERGENIC
SBS	Chr2	33735211	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g55080
SBS	Chr2	34711752	T-A	HET	INTERGENIC
SBS	Chr3	2893819	G-A	HET	INTERGENIC
SBS	Chr4	5711000	A-G	Homo	INTERGENIC
SBS	Chr4	25216932	G-A	HET	INTERGENIC
SBS	Chr4	30851457	G-A	Homo	INTERGENIC
SBS	Chr7	602609	T-G	HET	INTERGENIC
SBS	Chr7	6460236	T-C	HET	INTRON
SBS	Chr7	10033835	A-G	HET	INTRON
SBS	Chr7	14611698	A-T	HET	INTERGENIC
SBS	Chr7	14611699	G-T	HET	INTERGENIC
SBS	Chr8	12237822	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	15640239	A-G	HET	INTRON
SBS	Chr8	15640529	A-T	HET	INTRON
SBS	Chr10	12994879	C-T	Homo	INTERGENIC
SBS	Chr11	27057130	T-A	HET	INTERGENIC
SBS	Chr11	27057131	C-A	HET	INTERGENIC
SBS	Chr12	23460323	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g38200

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2920293	2920593	300
Deletion	Chr7	4145279	4145295	16
Deletion	Chr8	5045955	5045962	7
Deletion	Chr1	6288333	6288339	6
Deletion	Chr4	7613135	7613137	2
Deletion	Chr8	7779123	7779124	1
Deletion	Chr7	8773638	8773653	15
Deletion	Chr8	10167917	10167918	1
Deletion	Chr6	11659741	11659742	1
Deletion	Chr11	12045246	12045247	1
Deletion	Chr7	12876888	12878429	1541	LOC_Os07g22830
Deletion	Chr3	13517926	13517927	1
Deletion	Chr7	21656218	21656220	2	LOC_Os07g36230
Deletion	Chr6	22279433	22279438	5
Deletion	Chr3	23507367	23507381	14
Deletion	Chr6	24461320	24461405	85
Deletion	Chr5	24699586	24699587	1
Deletion	Chr5	25681932	25681937	5	LOC_Os05g44190
Deletion	Chr4	27160828	27160829	1
Deletion	Chr2	27196434	27196438	4
Deletion	Chr2	27506726	27506735	9
Deletion	Chr4	31748977	31749005	28

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	30681630	30681631	2
Insertion	Chr4	33348532	33348533	2
Insertion	Chr12	16534024	16534025	2
Insertion	Chr1	1474116	1474116	1
Insertion	Chr2	8918038	8918038	1
Insertion	Chr3	11795272	11795273	2
Insertion	Chr6	24017888	24017951	64
Insertion	Chr8	20465960	20465986	27
Insertion	Chr9	10434223	10434223	1
Insertion	Chr10	2169039	2169041	3
Insertion	Chr10	15626179	15626179	1
Insertion	Chr10	16527270	16527270	1
Insertion	Chr11	1585760	1585817	58
Insertion	Chr12	16534038	16534039	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	4308467	4927566	LOC_Os06g09660
Inversion	Chr6	4308480	4927603	LOC_Os06g09660

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8264897	Chr6	10400948	LOC_Os09g14010
Translocation	Chr11	28662509	Chr8	2920306	2
Translocation	Chr11	28662552	Chr9	8266078	2

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr6	11424369	11469463	45094	6

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