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Mutant Information

Mutant Name	FN1496-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1496-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10802739	A-G	HET	UTR_3_PRIME
SBS	Chr1	13409748	T-G	HET	INTERGENIC
SBS	Chr1	8561063	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g15300
SBS	Chr10	12056414	C-A	Homo	SPLICE_SITE_REGION
SBS	Chr10	22905633	G-T	Homo	INTERGENIC
SBS	Chr10	5407608	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	23763087	C-T	HET	INTERGENIC
SBS	Chr11	2752517	G-T	Homo	INTERGENIC
SBS	Chr11	8089663	C-T	Homo	INTERGENIC
SBS	Chr2	3888033	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g07510
SBS	Chr3	1653461	T-A	Homo	UTR_3_PRIME
SBS	Chr3	22566260	A-T	HET	INTERGENIC
SBS	Chr3	2535376	T-C	Homo	INTRON
SBS	Chr3	30418321	G-T	Homo	INTERGENIC
SBS	Chr3	9827961	C-T	HET	INTERGENIC
SBS	Chr4	16383717	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g27720
SBS	Chr5	12597599	G-A	HET	INTERGENIC
SBS	Chr5	15387078	C-T	HET	INTERGENIC
SBS	Chr5	17393812	C-T	Homo	INTERGENIC
SBS	Chr5	8112906	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	8112907	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g14400
SBS	Chr6	26582877	T-C	HET	SYNONYMOUS_CODING
SBS	Chr7	26760017	G-A	Homo	INTERGENIC
SBS	Chr7	29253137	G-A	Homo	INTERGENIC
SBS	Chr7	29253138	G-A	Homo	INTERGENIC
SBS	Chr7	7663724	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g13350
SBS	Chr7	7663725	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g13350
SBS	Chr8	1518433	C-A	Homo	INTERGENIC
SBS	Chr8	20920669	A-C	HET	INTERGENIC
SBS	Chr8	6798092	C-T	Homo	INTERGENIC
SBS	Chr9	21524495	A-C	HET	INTRON

Deletions: 38

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1014989	1014997	8
Deletion	Chr1	1302544	1314663	12119	3
Deletion	Chr3	2362475	2362476	1
Deletion	Chr3	2535154	2535164	10
Deletion	Chr5	2943967	2943976	9
Deletion	Chr10	3478370	3478371	1
Deletion	Chr5	3484472	3484473	1
Deletion	Chr10	3861913	3861914	1
Deletion	Chr5	5523632	5523642	10	LOC_Os05g09736
Deletion	Chr7	5816518	5816521	3
Deletion	Chr11	5842813	5842818	5
Deletion	Chr8	6415721	6415722	1
Deletion	Chr8	6761282	6761315	33
Deletion	Chr5	7832643	7832646	3
Deletion	Chr2	9339987	9339994	7
Deletion	Chr7	9359689	9359690	1	LOC_Os07g16054
Deletion	Chr2	9378529	9378536	7
Deletion	Chr2	9410618	9410620	2	LOC_Os02g16490
Deletion	Chr3	11314137	11314139	2
Deletion	Chr4	11974382	11974384	2
Deletion	Chr4	11985288	11985290	2
Deletion	Chr10	12127607	12127613	6
Deletion	Chr11	13148274	13148276	2
Deletion	Chr7	16034596	16034597	1
Deletion	Chr9	16042369	16042370	1
Deletion	Chr1	16811714	16829303	17589
Deletion	Chr12	21465824	21465843	19
Deletion	Chr4	23152704	23152793	89
Deletion	Chr7	26289379	26289380	1	LOC_Os07g43970
Deletion	Chr8	26570461	26570462	1
Deletion	Chr2	27615669	27615676	7
Deletion	Chr11	28725109	28725117	8
Deletion	Chr5	29013408	29013412	4
Deletion	Chr3	29405916	29405919	3
Deletion	Chr1	30741810	30741812	2
Deletion	Chr3	31052754	31052756	2
Deletion	Chr1	38907239	38907241	2
Deletion	Chr1	39742288	39742290	2

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	9124765	9124766	2
Insertion	Chr2	5765952	5766009	58
Insertion	Chr3	36410239	36410240	2
Insertion	Chr7	6152914	6152914	1
Insertion	Chr9	10031520	10031520	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	14373487	17770226
Inversion	Chr4	18861434	19144630

No Translocation

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