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Mutant Information

Mutant Name	FN1497-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1497-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31759553	G-A	HET	INTERGENIC
SBS	Chr10	3813073	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g07248
SBS	Chr11	16936356	C-T	HET	SPLICE_SITE_REGION
SBS	Chr11	17837728	G-A	HET	INTERGENIC
SBS	Chr11	22291403	G-T	Homo	INTRON
SBS	Chr12	13217382	G-T	Homo	STOP_GAINED	LOC_Os12g23350
SBS	Chr12	15541007	G-A	HET	INTERGENIC
SBS	Chr12	2281230	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g05160
SBS	Chr12	2723965	A-T	HET	INTERGENIC
SBS	Chr2	25949176	T-G	HET	INTRON
SBS	Chr2	29232510	A-T	HET	INTRON
SBS	Chr2	3959736	T-A	Homo	INTERGENIC
SBS	Chr2	6193169	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g11940
SBS	Chr2	6709073	G-T	HET	INTERGENIC
SBS	Chr3	25642881	C-T	Homo	INTERGENIC
SBS	Chr3	29335755	G-T	HET	UTR_5_PRIME
SBS	Chr3	9233155	G-A	HET	INTERGENIC
SBS	Chr4	2068377	G-A	HET	INTERGENIC
SBS	Chr4	5846098	T-C	HET	INTERGENIC
SBS	Chr5	14715132	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g25340
SBS	Chr5	29542343	C-T	HET	INTERGENIC
SBS	Chr5	4550226	T-A	HET	INTERGENIC
SBS	Chr5	5766959	A-C	HET	UTR_3_PRIME
SBS	Chr7	11198254	G-A	Homo	INTERGENIC
SBS	Chr7	22672035	C-T	HET	SYNONYMOUS_STOP
SBS	Chr7	28828542	C-T	HET	INTERGENIC
SBS	Chr7	6799760	T-C	Homo	UTR_3_PRIME
SBS	Chr8	27831334	C-T	HET	INTERGENIC
SBS	Chr8	8925488	C-T	HET	INTRON

Deletions: 41

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	510763	522787	12024	3
Deletion	Chr9	3813846	3813852	6
Deletion	Chr4	3926026	3926030	4	LOC_Os04g07370
Deletion	Chr11	3941173	3941182	9
Deletion	Chr10	4967414	4967417	3
Deletion	Chr5	5947575	5947583	8
Deletion	Chr2	8153636	8153637	1
Deletion	Chr5	9256628	9256639	11
Deletion	Chr2	9699726	9699744	18
Deletion	Chr8	10016076	10016077	1
Deletion	Chr11	10228897	10228898	1
Deletion	Chr11	10565073	10565080	7
Deletion	Chr4	10896804	10896805	1
Deletion	Chr5	11728185	11728186	1
Deletion	Chr6	12772700	12772704	4
Deletion	Chr3	13242102	13242115	13	LOC_Os03g22900
Deletion	Chr6	14001593	14001683	90
Deletion	Chr12	14093830	14093852	22
Deletion	Chr11	14283594	14283595	1
Deletion	Chr1	16317247	16317305	58
Deletion	Chr1	17432666	17432667	1
Deletion	Chr1	17779523	17779524	1
Deletion	Chr2	17927524	17929167	1643	LOC_Os02g30170
Deletion	Chr2	18487730	18487742	12
Deletion	Chr12	19886785	19886798	13
Deletion	Chr4	20038052	20038054	2
Deletion	Chr11	20427021	20427026	5
Deletion	Chr6	21514970	21514971	1
Deletion	Chr7	22681256	22681260	4	LOC_Os07g37820
Deletion	Chr1	23363041	23363042	1
Deletion	Chr12	23486266	23486267	1
Deletion	Chr1	24307447	24307449	2
Deletion	Chr4	26093764	26093765	1	LOC_Os04g44030
Deletion	Chr2	26804827	26804835	8
Deletion	Chr3	28305980	28305981	1
Deletion	Chr2	29024644	29027278	2634	2
Deletion	Chr2	29220423	29220432	9
Deletion	Chr2	29231379	29231380	1
Deletion	Chr5	29583114	29583115	1
Deletion	Chr2	34315421	34315422	1	LOC_Os02g56060
Deletion	Chr3	34705954	34705955	1

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	20418513	20418514	2
Insertion	Chr1	42907858	42907875	18
Insertion	Chr10	2769497	2769574	78
Insertion	Chr11	22961883	22961886	4
Insertion	Chr11	7897062	7897062	1
Insertion	Chr2	28054698	28054765	68	LOC_Os02g46040
Insertion	Chr3	24454434	24454465	32
Insertion	Chr3	32638967	32639038	72
Insertion	Chr4	30424160	30424160	1
Insertion	Chr5	3125273	3125280	8
Insertion	Chr6	1477903	1477908	6
Insertion	Chr7	23454251	23454251	1
Insertion	Chr9	22493059	22493100	42
Insertion	Chr9	22800028	22800029	2

No Inversion

No Translocation

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