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Mutant Information

Mutant Name	FN1505-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1505-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24609153	G-A	HET	INTERGENIC
SBS	Chr1	36293327	T-C	HET	INTERGENIC
SBS	Chr10	15668350	A-T	HET	INTERGENIC
SBS	Chr10	2724219	A-G	HET	INTERGENIC
SBS	Chr10	9534108	G-T	HET	INTERGENIC
SBS	Chr11	25042590	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g41710
SBS	Chr11	4886097	C-A	HET	INTERGENIC
SBS	Chr12	12033303	A-T	HET	INTERGENIC
SBS	Chr12	15542227	G-A	HET	INTERGENIC
SBS	Chr12	1580816	T-C	HET	INTERGENIC
SBS	Chr12	1580818	G-C	HET	INTERGENIC
SBS	Chr12	7618299	C-A	HET	INTRON
SBS	Chr12	7641669	T-C	HET	INTRON
SBS	Chr3	13469215	A-C	HET	SYNONYMOUS_CODING
SBS	Chr3	5830468	C-A	HET	INTRON
SBS	Chr3	9643239	T-A	HET	INTERGENIC
SBS	Chr4	12949922	T-G	Homo	INTERGENIC
SBS	Chr4	20270225	G-A	HET	INTERGENIC
SBS	Chr5	12694198	C-T	Homo	INTERGENIC
SBS	Chr5	13987206	C-T	HET	INTERGENIC
SBS	Chr5	5007085	A-G	HET	INTERGENIC
SBS	Chr6	13265201	T-C	HET	SPLICE_SITE_REGION
SBS	Chr6	19718481	A-G	HET	SYNONYMOUS_CODING
SBS	Chr6	20593752	G-T	HET	INTERGENIC
SBS	Chr7	11104999	A-C	HET	INTERGENIC
SBS	Chr7	14457635	T-C	HET	INTRON
SBS	Chr7	1939682	G-A	HET	INTERGENIC
SBS	Chr7	19465565	C-T	Homo	INTERGENIC
SBS	Chr7	19465566	C-T	Homo	INTERGENIC
SBS	Chr7	23386867	A-G	Homo	INTERGENIC
SBS	Chr7	6965784	C-A	HET	INTERGENIC
SBS	Chr8	11526654	C-A	HET	INTRON
SBS	Chr8	15679493	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g25750
SBS	Chr8	18850788	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g30590
SBS	Chr8	19874833	A-G	HET	INTERGENIC
SBS	Chr9	11341540	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g18500
SBS	Chr9	2992485	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g06360
SBS	Chr9	9557576	T-G	HET	INTERGENIC

Deletions: 41

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1991035	1991036	1
Deletion	Chr10	2203722	2203723	1
Deletion	Chr8	3688200	3688201	1	LOC_Os08g06500
Deletion	Chr8	3892830	3892832	2
Deletion	Chr12	4265695	4265697	2
Deletion	Chr10	4487752	4487756	4
Deletion	Chr6	4832097	4832098	1
Deletion	Chr4	4845538	4863698	18160	2
Deletion	Chr6	5824318	5824321	3
Deletion	Chr6	6638052	6638053	1
Deletion	Chr6	6878768	6878771	3	LOC_Os06g12620
Deletion	Chr11	7635710	7635734	24
Deletion	Chr1	7638507	7638508	1
Deletion	Chr12	7640410	7640413	3
Deletion	Chr7	8441495	8441496	1
Deletion	Chr6	9337034	9337052	18	LOC_Os06g16370
Deletion	Chr5	10276590	10276591	1
Deletion	Chr1	11451931	11451939	8
Deletion	Chr6	14809283	14809288	5
Deletion	Chr1	15020403	15020409	6	LOC_Os01g26970
Deletion	Chr5	16117011	16117012	1
Deletion	Chr5	16117023	16117024	1
Deletion	Chr11	16986197	16986200	3	LOC_Os11g29290
Deletion	Chr8	17070277	17070298	21
Deletion	Chr12	17167271	17167272	1
Deletion	Chr6	17319843	17319845	2
Deletion	Chr6	17447287	17447306	19
Deletion	Chr1	17611686	17611688	2
Deletion	Chr12	17661072	17661073	1	LOC_Os12g29605
Deletion	Chr6	18871581	18871582	1
Deletion	Chr11	19924628	19924644	16
Deletion	Chr7	20383853	20383854	1
Deletion	Chr6	20554456	20554457	1
Deletion	Chr6	21017658	21017659	1
Deletion	Chr4	22505150	22505196	46
Deletion	Chr12	25258594	25258595	1
Deletion	Chr3	25528868	25528987	119
Deletion	Chr4	25887960	25887961	1
Deletion	Chr11	26794654	26794655	1
Deletion	Chr5	29103569	29103571	2
Deletion	Chr3	29352391	29352392	1

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	1623145	1623146	2
Insertion	Chr11	25763332	25763335	4
Insertion	Chr12	9709792	9709813	22
Insertion	Chr4	18552929	18552929	1
Insertion	Chr4	22875321	22875321	1
Insertion	Chr4	30718755	30718756	2
Insertion	Chr5	10210194	10210194	1
Insertion	Chr5	16785370	16785373	4
Insertion	Chr5	21181961	21181962	2
Insertion	Chr6	12035929	12035929	1
Insertion	Chr6	16620877	16620878	2
Insertion	Chr7	16871129	16871129	1
Insertion	Chr7	3304066	3304081	16
Insertion	Chr8	20633622	20633623	2
Insertion	Chr9	3643799	3643837	39
Insertion	Chr9	8285447	8285447	1	LOC_Os09g14019

No Inversion

No Translocation

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