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Mutant Information

Mutant Name	FN1506-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1506-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 52

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10531805	T-G	HET	INTERGENIC
SBS	Chr1	301642	G-T	HET	INTERGENIC
SBS	Chr1	35910261	G-A	HET	INTERGENIC
SBS	Chr1	37940785	G-T	HET	INTERGENIC
SBS	Chr1	40358435	A-G	HET	INTRON
SBS	Chr1	40753029	A-T	HET	INTERGENIC
SBS	Chr11	16118085	A-G	HET	INTERGENIC
SBS	Chr11	18780010	A-G	HET	INTRON
SBS	Chr11	2189572	T-A	HET	INTERGENIC
SBS	Chr11	3159601	G-T	HET	INTERGENIC
SBS	Chr11	3601472	C-T	HET	INTERGENIC
SBS	Chr11	5969174	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g10820
SBS	Chr11	8660674	C-A	HET	INTERGENIC
SBS	Chr12	17881374	G-A	HET	INTERGENIC
SBS	Chr12	22997301	C-T	HET	STOP_GAINED	LOC_Os12g37470
SBS	Chr12	25676880	G-A	HET	INTERGENIC
SBS	Chr12	7490368	G-A	HET	INTERGENIC
SBS	Chr12	8824483	T-C	HET	UTR_3_PRIME
SBS	Chr2	12119369	G-A	HET	INTERGENIC
SBS	Chr2	14147567	C-A	HET	INTERGENIC
SBS	Chr2	26882862	A-G	HET	INTERGENIC
SBS	Chr3	17668128	C-A	HET	INTERGENIC
SBS	Chr3	21356150	T-C	Homo	INTRON
SBS	Chr3	24080178	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g43160
SBS	Chr3	29780382	C-T	HET	INTERGENIC
SBS	Chr3	30938442	T-C	HET	INTRON
SBS	Chr3	31578634	A-T	HET	INTERGENIC
SBS	Chr3	34832667	T-A	HET	INTERGENIC
SBS	Chr3	7841719	C-T	HET	INTRON
SBS	Chr4	21055497	G-T	HET	INTERGENIC
SBS	Chr4	7579217	G-T	HET	INTRON
SBS	Chr5	10704413	A-T	HET	INTERGENIC
SBS	Chr6	11882240	G-A	HET	INTERGENIC
SBS	Chr6	17652576	T-A	Homo	INTERGENIC
SBS	Chr6	28532765	G-A	HET	INTRON
SBS	Chr6	28565191	C-T	HET	INTERGENIC
SBS	Chr6	28604747	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g47170
SBS	Chr6	4329662	G-T	HET	INTERGENIC
SBS	Chr7	16991746	C-A	HET	INTERGENIC
SBS	Chr7	28682892	C-T	HET	INTERGENIC
SBS	Chr7	7644064	C-T	HET	INTERGENIC
SBS	Chr7	786271	A-T	Homo	INTERGENIC
SBS	Chr8	14728141	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g24390
SBS	Chr8	22902793	G-T	HET	INTERGENIC
SBS	Chr8	25137412	T-A	HET	INTERGENIC
SBS	Chr8	25137416	G-T	HET	INTERGENIC
SBS	Chr9	15927592	G-T	HET	INTRON
SBS	Chr9	15927594	G-T	HET	INTRON
SBS	Chr9	16508344	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	7410020	C-A	HET	INTERGENIC
SBS	Chr9	7783969	G-T	HET	INTERGENIC
SBS	Chr9	7847293	C-T	Homo	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1268719	1268720	1
Deletion	Chr1	3663176	3663187	11
Deletion	Chr7	4028155	4028157	2
Deletion	Chr12	4442629	4442630	1
Deletion	Chr9	9122329	9122333	4
Deletion	Chr6	9563001	9764000	201000	21
Deletion	Chr11	9930962	9930968	6
Deletion	Chr1	12165805	12165815	10
Deletion	Chr1	12661856	12661857	1
Deletion	Chr3	13152831	13152832	1
Deletion	Chr3	13876671	13876672	1
Deletion	Chr7	16244771	16244772	1
Deletion	Chr9	16508057	16508070	13
Deletion	Chr9	16835227	16835251	24	LOC_Os09g27660
Deletion	Chr11	17624532	17624537	5
Deletion	Chr5	20982187	20982188	1
Deletion	Chr11	21760683	21760684	1
Deletion	Chr10	21903152	21903153	1
Deletion	Chr2	21957239	21957254	15
Deletion	Chr8	22592262	22592267	5
Deletion	Chr12	22595978	22595979	1
Deletion	Chr2	23799923	23799933	10
Deletion	Chr1	24742046	24742091	45	LOC_Os01g43290
Deletion	Chr2	27427059	27427061	2

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	4967491	4967496	6
Insertion	Chr10	1328414	1328414	1
Insertion	Chr11	24526983	24526984	2
Insertion	Chr12	16822894	16822895	2
Insertion	Chr2	20036593	20036598	6
Insertion	Chr2	26377565	26377568	4
Insertion	Chr4	12143923	12143964	42
Insertion	Chr4	1950443	1950443	1
Insertion	Chr5	14255770	14255770	1
Insertion	Chr6	18644092	18644092	1
Insertion	Chr7	12374112	12374115	4
Insertion	Chr8	14632082	14632083	2
Insertion	Chr8	18433412	18433423	12	LOC_Os08g30010
Insertion	Chr8	2884665	2884665	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	11611399	13232394	LOC_Os01g20830
Inversion	Chr1	11611819	12335388	2
Inversion	Chr4	13201774	14870565	LOC_Os04g25660
Inversion	Chr7	16240815	16345620	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	5549235	Chr5	28600192	LOC_Os05g49840
Translocation	Chr6	5558136	Chr5	28600179	2

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