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Mutant Information

Mutant Name	FN1508-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1508-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15263429	G-C	HET	INTERGENIC
SBS	Chr1	26896886	G-C	HET	INTERGENIC
SBS	Chr1	27277478	G-T	HET	INTRON
SBS	Chr1	34517435	A-G	HET	SYNONYMOUS_CODING
SBS	Chr10	14642702	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g28200
SBS	Chr11	11856917	C-T	HET	STOP_GAINED	LOC_Os11g20470
SBS	Chr11	18627248	A-T	HET	INTERGENIC
SBS	Chr11	21814101	G-A	HET	INTERGENIC
SBS	Chr11	25096761	A-G	HET	INTERGENIC
SBS	Chr2	13534741	C-T	Homo	INTRON
SBS	Chr2	30370446	C-T	Homo	INTERGENIC
SBS	Chr2	32042403	A-T	Homo	INTRON
SBS	Chr2	548802	C-A	Homo	INTERGENIC
SBS	Chr3	29129302	G-A	Homo	INTRON
SBS	Chr4	12792495	C-A	HET	INTERGENIC
SBS	Chr4	33300835	C-T	HET	INTERGENIC
SBS	Chr4	34627370	G-C	HET	INTRON
SBS	Chr4	4375989	T-C	HET	INTERGENIC
SBS	Chr4	5162542	A-T	HET	INTRON
SBS	Chr5	28359956	T-C	Homo	INTERGENIC
SBS	Chr5	4332934	G-A	Homo	INTERGENIC
SBS	Chr5	6450931	C-T	Homo	INTRON
SBS	Chr6	6341012	C-T	Homo	INTERGENIC
SBS	Chr7	2435242	A-T	HET	INTERGENIC
SBS	Chr7	24739814	A-G	Homo	INTRON
SBS	Chr7	4666351	T-G	HET	INTRON
SBS	Chr7	8404042	C-T	Homo	INTERGENIC
SBS	Chr8	23442305	G-A	Homo	INTERGENIC
SBS	Chr8	7518954	G-A	HET	INTERGENIC
SBS	Chr9	14687465	T-C	HET	INTERGENIC
SBS	Chr9	6546300	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g11730

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	498148	498149	1	LOC_Os07g01840
Deletion	Chr8	3252028	3252038	10
Deletion	Chr2	5422262	5422263	1	LOC_Os02g10320
Deletion	Chr7	5670171	5670204	33
Deletion	Chr2	6010829	6010831	2
Deletion	Chr4	6016522	6016530	8
Deletion	Chr7	6531029	6531052	23	LOC_Os07g11800
Deletion	Chr11	7767725	7767726	1
Deletion	Chr9	8188321	8188325	4
Deletion	Chr3	9573359	9573360	1
Deletion	Chr7	10095333	10095334	1
Deletion	Chr11	12274595	12274596	1
Deletion	Chr8	12443654	12443657	3
Deletion	Chr7	12858589	12858591	2
Deletion	Chr1	13998737	13998738	1
Deletion	Chr9	14142754	14142755	1
Deletion	Chr4	14214158	14214165	7
Deletion	Chr9	16324308	16324310	2
Deletion	Chr11	16576392	16576400	8	LOC_Os11g28660
Deletion	Chr9	16609860	16609861	1
Deletion	Chr4	17930001	18014000	84000	14
Deletion	Chr5	17994383	17994390	7
Deletion	Chr4	18102292	18102293	1
Deletion	Chr2	19387791	19387801	10
Deletion	Chr4	19585731	19585736	5
Deletion	Chr7	20765514	20765516	2
Deletion	Chr7	24629876	24629886	10
Deletion	Chr12	27291929	27291930	1
Deletion	Chr3	35386029	35386036	7	LOC_Os03g62500
Deletion	Chr1	43166096	43166099	3	LOC_Os01g74530

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	4781732	4781737	6
Insertion	Chr2	19962420	19962420	1
Insertion	Chr7	27282369	27282370	2
Insertion	Chr7	9114721	9114721	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	15353557	25364044	LOC_Os02g26130

No Translocation

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