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Mutant Information

Mutant Name	FN1515-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1515-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13850172	C-A	Homo	INTERGENIC
SBS	Chr1	26716254	C-T	HET	INTERGENIC
SBS	Chr1	29842797	T-C	HET	UTR_3_PRIME
SBS	Chr10	11837701	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g22770
SBS	Chr11	17412532	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g29970
SBS	Chr11	18836550	C-T	HET	INTERGENIC
SBS	Chr12	19421957	C-T	Homo	INTERGENIC
SBS	Chr12	8337924	C-T	HET	INTERGENIC
SBS	Chr2	15246021	C-T	HET	INTRON
SBS	Chr2	2943152	G-A	HET	INTERGENIC
SBS	Chr2	30926419	G-A	HET	STOP_GAINED	LOC_Os02g50630
SBS	Chr2	3671083	A-T	HET	INTERGENIC
SBS	Chr2	7035881	T-A	HET	INTERGENIC
SBS	Chr3	18563763	A-T	Homo	INTERGENIC
SBS	Chr3	6314468	C-T	Homo	INTERGENIC
SBS	Chr4	1390016	G-A	HET	INTRON
SBS	Chr4	17177776	A-G	HET	INTERGENIC
SBS	Chr4	33359893	C-G	HET	INTERGENIC
SBS	Chr4	5314405	A-G	HET	INTERGENIC
SBS	Chr5	13630192	C-T	Homo	INTERGENIC
SBS	Chr5	24806405	C-A	HET	INTERGENIC
SBS	Chr6	23958563	G-T	HET	SYNONYMOUS_CODING
SBS	Chr6	23958564	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g40220
SBS	Chr6	25261896	C-T	HET	INTERGENIC
SBS	Chr7	11198268	G-T	HET	INTERGENIC
SBS	Chr7	15177008	T-C	HET	INTRON
SBS	Chr7	15467890	T-C	HET	SYNONYMOUS_CODING
SBS	Chr7	26707412	G-A	HET	INTRON
SBS	Chr7	4133317	T-C	Homo	INTERGENIC
SBS	Chr7	6949382	A-T	HET	INTERGENIC
SBS	Chr8	10345365	C-A	HET	INTERGENIC
SBS	Chr8	14411307	T-A	HET	INTERGENIC
SBS	Chr8	21659033	C-T	HET	INTERGENIC
SBS	Chr9	13250147	A-G	Homo	INTERGENIC
SBS	Chr9	19957146	G-T	HET	SYNONYMOUS_CODING

Deletions: 46

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	298833	309180	10347	LOC_Os04g01439
Deletion	Chr10	688742	688749	7
Deletion	Chr4	1903613	1903615	2
Deletion	Chr8	2355558	2355562	4
Deletion	Chr12	2716357	2716363	6
Deletion	Chr7	4058912	4058927	15	LOC_Os07g08010
Deletion	Chr2	4258004	4258008	4
Deletion	Chr7	5399526	5399529	3
Deletion	Chr4	5546389	5546390	1
Deletion	Chr9	5565609	5565612	3
Deletion	Chr2	6030286	6030287	1
Deletion	Chr1	6517777	6517803	26
Deletion	Chr8	6519399	6519401	2
Deletion	Chr4	6612751	6612765	14
Deletion	Chr11	7286199	7286200	1
Deletion	Chr7	8945749	8945757	8
Deletion	Chr7	13230596	13230620	24
Deletion	Chr11	13627460	13627461	1
Deletion	Chr9	13652327	13652335	8
Deletion	Chr9	13802956	13802957	1
Deletion	Chr6	14029804	14029806	2
Deletion	Chr11	14070776	14070777	1	LOC_Os11g24670
Deletion	Chr10	14833490	14833491	1	LOC_Os10g28510
Deletion	Chr3	15610475	15610477	2
Deletion	Chr1	16857215	16857216	1
Deletion	Chr3	17323940	17323961	21
Deletion	Chr2	18320145	18320146	1
Deletion	Chr6	18695660	18695661	1
Deletion	Chr7	19262667	19262668	1	LOC_Os07g32400
Deletion	Chr11	20228227	20228233	6
Deletion	Chr8	20564578	20564580	2	LOC_Os08g33082
Deletion	Chr2	20710918	20710934	16	LOC_Os02g34550
Deletion	Chr1	22233453	22233458	5
Deletion	Chr8	22544442	22544443	1
Deletion	Chr10	22611149	22611159	10
Deletion	Chr6	23372705	23372706	1
Deletion	Chr1	23825350	23825390	40
Deletion	Chr2	24022495	24022503	8
Deletion	Chr1	24408279	24408307	28
Deletion	Chr6	24865646	24865662	16
Deletion	Chr8	25192710	25192711	1
Deletion	Chr8	26266329	26266331	2	LOC_Os08g41580
Deletion	Chr4	26593257	26593259	2
Deletion	Chr1	26821219	26821295	76
Deletion	Chr3	34366426	34366429	3
Deletion	Chr4	35146137	35146138	1	LOC_Os04g59090

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	11509713	11509715	3
Insertion	Chr11	12088883	12088935	53
Insertion	Chr11	1878359	1878360	2
Insertion	Chr11	22634284	22634285	2
Insertion	Chr11	28782639	28782640	2
Insertion	Chr11	5773089	5773111	23
Insertion	Chr2	16857280	16857297	18	LOC_Os02g28500
Insertion	Chr4	20122606	20122614	9
Insertion	Chr5	21533926	21533926	1
Insertion	Chr5	49552	49553	2
Insertion	Chr6	18507252	18507253	2
Insertion	Chr6	2780756	2780757	2	LOC_Os06g06050
Insertion	Chr6	3459409	3459409	1
Insertion	Chr6	899441	899441	1
Insertion	Chr7	14259631	14259689	59
Insertion	Chr7	654349	654362	14
Insertion	Chr7	9430294	9430295	2

No Inversion

No Translocation

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