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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23925481	G-A	Homo	INTRON
SBS	Chr1	40015583	G-A	HET	INTERGENIC
SBS	Chr1	40238067	G-A	Homo	UTR_3_PRIME
SBS	Chr1	8067011	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g14420
SBS	Chr10	14604688	G-A	HET	INTERGENIC
SBS	Chr12	11468824	T-G	Homo	UTR_3_PRIME
SBS	Chr12	15356719	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g26310
SBS	Chr12	25599175	G-T	HET	INTERGENIC
SBS	Chr12	25599176	A-T	HET	INTERGENIC
SBS	Chr12	4115463	G-T	HET	INTERGENIC
SBS	Chr12	5788951	C-T	HET	INTERGENIC
SBS	Chr2	10738237	C-T	HET	INTERGENIC
SBS	Chr2	10902876	C-G	HET	INTERGENIC
SBS	Chr2	22163189	G-A	HET	INTERGENIC
SBS	Chr3	14119638	C-A	Homo	INTRON
SBS	Chr3	15609684	C-G	HET	INTERGENIC
SBS	Chr3	3721770	T-C	HET	INTERGENIC
SBS	Chr3	5068311	A-G	HET	INTERGENIC
SBS	Chr3	5431428	G-A	HET	INTRON
SBS	Chr4	15242428	T-G	Homo	INTRON
SBS	Chr4	26353955	T-C	HET	INTERGENIC
SBS	Chr4	27544994	T-C	HET	UTR_3_PRIME
SBS	Chr4	277372	C-T	HET	STOP_GAINED	LOC_Os04g01370
SBS	Chr6	19628509	A-G	HET	INTERGENIC
SBS	Chr6	6968587	G-A	Homo	INTERGENIC
SBS	Chr7	10791173	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	18260666	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g30850
SBS	Chr7	28510712	G-T	HET	INTERGENIC
SBS	Chr8	10116074	C-T	HET	INTERGENIC
SBS	Chr8	19668533	T-G	HET	INTRON
SBS	Chr8	22068428	T-A	HET	INTERGENIC
SBS	Chr8	23667308	A-T	Homo	INTERGENIC
SBS	Chr8	25797826	T-G	HET	INTERGENIC

Deletions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	427663	427664	1	LOC_Os06g01730
Deletion	Chr1	2187920	2187921	1	LOC_Os01g04780
Deletion	Chr5	4281740	4281745	5
Deletion	Chr3	5331423	5331427	4	LOC_Os03g10478
Deletion	Chr2	6114433	6114439	6	LOC_Os02g11820
Deletion	Chr7	6976148	6976170	22
Deletion	Chr9	7043915	7043916	1
Deletion	Chr1	8064233	8064235	2
Deletion	Chr2	8481912	8481921	9
Deletion	Chr9	8846809	8846884	75	LOC_Os09g14840
Deletion	Chr5	8955269	8955274	5
Deletion	Chr4	9270412	9270432	20
Deletion	Chr12	9423591	9423599	8	LOC_Os12g16450
Deletion	Chr11	11264977	11264987	10
Deletion	Chr5	11475435	11475438	3
Deletion	Chr3	12222693	12222694	1
Deletion	Chr6	12949651	12949652	1
Deletion	Chr11	13862778	13862779	1
Deletion	Chr10	14758535	14758536	1
Deletion	Chr11	15504954	15504955	1
Deletion	Chr9	16116159	16116161	2
Deletion	Chr4	18650222	18650226	4
Deletion	Chr4	19484078	19484105	27	LOC_Os04g32470
Deletion	Chr12	20367485	20367486	1
Deletion	Chr1	20584427	20584429	2
Deletion	Chr6	20609623	20609632	9
Deletion	Chr3	21047348	21047349	1
Deletion	Chr3	22770001	22842000	72000	10
Deletion	Chr3	23427662	23427663	1
Deletion	Chr6	24915674	24915675	1
Deletion	Chr4	25113079	25113080	1
Deletion	Chr6	26102884	26102887	3
Deletion	Chr3	26372540	26372541	1	LOC_Os03g46590
Deletion	Chr4	26725853	26725854	1
Deletion	Chr2	26991086	26991107	21
Deletion	Chr2	27818252	27818253	1	LOC_Os02g45720
Deletion	Chr7	27994281	27994282	1
Deletion	Chr1	33133950	33133954	4
Deletion	Chr1	37280819	37280825	6

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	1106556	1106556	1	LOC_Os01g02960
Insertion	Chr10	11296815	11296818	4
Insertion	Chr10	7034983	7034988	6
Insertion	Chr11	12297659	12297696	38
Insertion	Chr3	24154913	24154915	3
Insertion	Chr4	20111015	20111085	71
Insertion	Chr8	1840471	1840541	71	LOC_Os08g03860
Insertion	Chr9	14265569	14265571	3	LOC_Os09g23920
Insertion	Chr9	17265060	17265060	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	8155492	8227878	LOC_Os06g14510
Inversion	Chr3	22661045	22842348	LOC_Os03g40725
Inversion	Chr5	24840063	24896788	LOC_Os05g42410

No Translocation

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