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Mutant Information

Mutant Name	FN1521-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1521-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17620432	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g32184
SBS	Chr1	34678425	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g59980
SBS	Chr1	34966303	T-A	Homo	INTERGENIC
SBS	Chr1	34966312	G-C	Homo	INTERGENIC
SBS	Chr1	8358521	C-G	Homo	INTERGENIC
SBS	Chr10	2480570	T-C	HET	UTR_5_PRIME
SBS	Chr10	4856174	T-C	HET	INTERGENIC
SBS	Chr11	10704964	C-A	HET	INTERGENIC
SBS	Chr11	21732777	C-T	HET	UTR_5_PRIME
SBS	Chr11	9270327	G-A	HET	INTRON
SBS	Chr12	16737844	G-T	Homo	INTERGENIC
SBS	Chr12	17805113	G-C	Homo	INTERGENIC
SBS	Chr2	21978201	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	32641964	C-A	HET	INTERGENIC
SBS	Chr3	18672999	A-T	Homo	INTERGENIC
SBS	Chr3	3344586	C-T	HET	INTERGENIC
SBS	Chr3	9013114	C-A	Homo	INTRON
SBS	Chr4	10934932	G-C	HET	INTRON
SBS	Chr4	10983798	T-G	HET	INTERGENIC
SBS	Chr4	2085039	C-G	HET	INTERGENIC
SBS	Chr4	26797092	G-C	HET	INTERGENIC
SBS	Chr4	4524730	C-T	HET	INTERGENIC
SBS	Chr4	7155682	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g12960
SBS	Chr5	16079678	C-A	HET	INTERGENIC
SBS	Chr5	21590194	G-A	HET	INTRON
SBS	Chr5	21951982	A-T	HET	INTRON
SBS	Chr6	26062501	G-A	HET	INTRON
SBS	Chr6	4838299	T-A	HET	INTERGENIC
SBS	Chr7	13898192	G-T	HET	INTERGENIC
SBS	Chr7	14281446	C-A	HET	INTRON
SBS	Chr7	23314818	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g38860
SBS	Chr7	23314844	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	27319728	A-C	HET	SYNONYMOUS_CODING
SBS	Chr7	9592002	G-T	HET	INTRON
SBS	Chr8	25205434	G-A	HET	INTERGENIC
SBS	Chr8	5161938	A-T	HET	INTERGENIC

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	548639	548658	19
Deletion	Chr8	2225406	2225409	3
Deletion	Chr7	3518933	3518940	7
Deletion	Chr2	3588139	3588169	30
Deletion	Chr11	4158959	4158961	2
Deletion	Chr1	4831278	4831282	4
Deletion	Chr2	4933473	4933483	10	LOC_Os02g09580
Deletion	Chr11	6503181	6503187	6
Deletion	Chr7	7437001	7499000	62000	11
Deletion	Chr12	8797140	8797142	2	LOC_Os12g15400
Deletion	Chr7	9433152	9433153	1
Deletion	Chr10	14490066	14490072	6
Deletion	Chr9	16467660	16467662	2
Deletion	Chr7	17073307	17073326	19
Deletion	Chr5	18577061	18577223	162	LOC_Os05g31910
Deletion	Chr5	19333679	19333680	1
Deletion	Chr2	19437747	19437748	1	LOC_Os02g32730
Deletion	Chr5	19917282	19917295	13
Deletion	Chr10	23182674	23182675	1
Deletion	Chr5	24649166	24649168	2
Deletion	Chr3	25955259	25955260	1
Deletion	Chr5	26296550	26296553	3
Deletion	Chr2	26593153	26593155	2	LOC_Os02g44060
Deletion	Chr7	27614441	27614446	5
Deletion	Chr1	29472937	29472938	1
Deletion	Chr4	29688265	29688269	4
Deletion	Chr1	29873318	29873320	2
Deletion	Chr1	33096669	33096670	1
Deletion	Chr4	35032052	35032092	40	LOC_Os04g58890
Deletion	Chr2	35863415	35863416	1
Deletion	Chr1	42973030	42973053	23

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	11712423	11712423	1
Insertion	Chr1	21726610	21726612	3
Insertion	Chr1	9445153	9445154	2
Insertion	Chr10	17822556	17822556	1	LOC_Os10g33740
Insertion	Chr11	13435189	13435230	42
Insertion	Chr2	9452252	9452252	1
Insertion	Chr4	6510891	6510893	3
Insertion	Chr4	6690799	6690800	2
Insertion	Chr4	7765631	7765631	1
Insertion	Chr6	26612099	26612106	8
Insertion	Chr8	25412077	25412078	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	7317977	7437665	LOC_Os07g12790
Inversion	Chr7	7318005	7499343	2
Inversion	Chr11	13402305	13600433	2
Inversion	Chr8	16899686	20420969

No Translocation

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