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Mutant Information

Mutant NameFN1521-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN1521-S Alignment File
Seed AvailabilityYes [Order Seeds]
Phenotype
  • TO:0000326 (Leaf Color) = Normal
  • TO:0000346 (Tiller number) = Normal (Between 75% and 125%)
  • TO:0000430 (Germination Rate) = Normal (Between 75% and 125%)
For more information, please see this phenotype file
Mapping
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Variant Information

Single base substitutions: 36
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr117620432A-CHomoNON_SYNONYMOUS_CODINGLOC_Os01g32184
SBSChr134678425C-THomoNON_SYNONYMOUS_CODINGLOC_Os01g59980
SBSChr134966303T-AHomoINTERGENIC
SBSChr134966312G-CHomoINTERGENIC
SBSChr18358521C-GHomoINTERGENIC
SBSChr102480570T-CHETUTR_5_PRIME
SBSChr104856174T-CHETINTERGENIC
SBSChr1110704964C-AHETINTERGENIC
SBSChr1121732777C-THETUTR_5_PRIME
SBSChr119270327G-AHETINTRON
SBSChr1216737844G-THomoINTERGENIC
SBSChr1217805113G-CHomoINTERGENIC
SBSChr221978201G-AHETSYNONYMOUS_CODING
SBSChr232641964C-AHETINTERGENIC
SBSChr318672999A-THomoINTERGENIC
SBSChr33344586C-THETINTERGENIC
SBSChr39013114C-AHomoINTRON
SBSChr410934932G-CHETINTRON
SBSChr410983798T-GHETINTERGENIC
SBSChr42085039C-GHETINTERGENIC
SBSChr426797092G-CHETINTERGENIC
SBSChr44524730C-THETINTERGENIC
SBSChr47155682A-THETNON_SYNONYMOUS_CODINGLOC_Os04g12960
SBSChr516079678C-AHETINTERGENIC
SBSChr521590194G-AHETINTRON
SBSChr521951982A-THETINTRON
SBSChr626062501G-AHETINTRON
SBSChr64838299T-AHETINTERGENIC
SBSChr713898192G-THETINTERGENIC
SBSChr714281446C-AHETINTRON
SBSChr723314818G-AHETNON_SYNONYMOUS_CODINGLOC_Os07g38860
SBSChr723314844G-AHETSYNONYMOUS_CODING
SBSChr727319728A-CHETSYNONYMOUS_CODING
SBSChr79592002G-THETINTRON
SBSChr825205434G-AHETINTERGENIC
SBSChr85161938A-THETINTERGENIC

Deletions: 31
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr454863954865819
DeletionChr8222540622254093
DeletionChr7351893335189407
DeletionChr23588139358816930
DeletionChr11415895941589612
DeletionChr1483127848312824
DeletionChr24933473493348310LOC_Os02g09580
DeletionChr11650318165031876
DeletionChr7743700174990006200011
DeletionChr12879714087971422LOC_Os12g15400
DeletionChr7943315294331531
DeletionChr1014490066144900726
DeletionChr916467660164676622
DeletionChr7170733071707332619
DeletionChr51857706118577223162LOC_Os05g31910
DeletionChr519333679193336801
DeletionChr219437747194377481LOC_Os02g32730
DeletionChr5199172821991729513
DeletionChr1023182674231826751
DeletionChr524649166246491682
DeletionChr325955259259552601
DeletionChr526296550262965533
DeletionChr226593153265931552LOC_Os02g44060
DeletionChr727614441276144465
DeletionChr129472937294729381
DeletionChr429688265296882694
DeletionChr129873318298733202
DeletionChr133096669330966701
DeletionChr4350320523503209240LOC_Os04g58890
DeletionChr235863415358634161
DeletionChr1429730304297305323

Insertions: 11
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr111712423117124231
InsertionChr121726610217266123
InsertionChr1944515394451542
InsertionChr1017822556178225561LOC_Os10g33740image
InsertionChr11134351891343523042
InsertionChr2945225294522521
InsertionChr4651089165108933
InsertionChr4669079966908002
InsertionChr4776563177656311
InsertionChr626612099266121068
InsertionChr825412077254120782

Inversions: 4
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr773179777437665LOC_Os07g12790
InversionChr7731800574993432
InversionChr1113402305136004332
InversionChr81689968620420969

No Translocation