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Mutant Information

Mutant Name	FN1522-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1522-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12611106	C-T	Homo	INTERGENIC
SBS	Chr1	29900476	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g52020
SBS	Chr1	31998735	T-A	HET	UTR_3_PRIME
SBS	Chr10	15824395	T-A	Homo	INTERGENIC
SBS	Chr10	19519984	A-T	Homo	INTRON
SBS	Chr2	26973565	T-C	HET	INTERGENIC
SBS	Chr3	19011660	A-C	HET	INTERGENIC
SBS	Chr3	30201278	A-G	HET	INTERGENIC
SBS	Chr4	11148033	C-T	Homo	INTERGENIC
SBS	Chr4	12688701	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g22400
SBS	Chr5	12081846	T-A	Homo	INTERGENIC
SBS	Chr5	12081847	A-T	Homo	INTERGENIC
SBS	Chr5	15370221	C-T	Homo	INTERGENIC
SBS	Chr5	16497698	C-T	Homo	INTERGENIC
SBS	Chr5	25568686	G-A	HET	INTERGENIC
SBS	Chr6	395185	C-G	HET	INTRON
SBS	Chr7	16769996	C-T	HET	INTERGENIC
SBS	Chr7	4714209	C-T	HET	INTERGENIC
SBS	Chr7	8121674	G-C	HET	INTERGENIC
SBS	Chr8	19922992	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g32110

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1200394	1218825	18431	3
Deletion	Chr11	1299921	1299929	8
Deletion	Chr4	2673751	2673756	5
Deletion	Chr11	3031510	3031513	3	LOC_Os11g06320
Deletion	Chr7	3855484	3855486	2
Deletion	Chr2	5754612	5754613	1
Deletion	Chr10	5849249	5849267	18
Deletion	Chr10	5858244	5858262	18
Deletion	Chr3	7960632	7960633	1
Deletion	Chr7	8122426	8122429	3
Deletion	Chr9	10424179	10424228	49
Deletion	Chr11	12200001	12267000	67000	3
Deletion	Chr5	14290288	14290292	4
Deletion	Chr10	14758822	14758825	3
Deletion	Chr10	15198061	15198062	1
Deletion	Chr5	16537843	16537850	7	LOC_Os05g28240
Deletion	Chr3	17559600	17559609	9
Deletion	Chr11	17821061	17821080	19
Deletion	Chr4	18500463	18500464	1
Deletion	Chr3	18785781	18785790	9
Deletion	Chr5	22150975	22150977	2
Deletion	Chr1	23087839	23087840	1
Deletion	Chr5	23531767	23531772	5
Deletion	Chr12	25108738	25108753	15
Deletion	Chr2	25907109	25907121	12
Deletion	Chr2	27356621	27356634	13
Deletion	Chr4	29259350	29259371	21	LOC_Os04g49080
Deletion	Chr3	29505594	29505691	97

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	39628774	39628783	10
Insertion	Chr1	40751028	40751031	4
Insertion	Chr10	4327687	4327700	14
Insertion	Chr3	10310328	10310347	20
Insertion	Chr4	27054666	27054667	2
Insertion	Chr4	34146858	34146866	9
Insertion	Chr6	2111442	2111443	2
Insertion	Chr7	6026911	6026911	1
Insertion	Chr8	10841937	10841937	1	LOC_Os08g17720
Insertion	Chr9	22500019	22500019	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	10233078	24986629	LOC_Os07g41694
Inversion	Chr6	11177477	12265439	LOC_Os06g19600
Inversion	Chr6	11177493	12265437	LOC_Os06g19600
Inversion	Chr5	13436303	13453068
Inversion	Chr2	34345440	35338919	LOC_Os02g57700
Inversion	Chr2	34508169	35338917	LOC_Os02g57700

No Translocation

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