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Mutant Information

Mutant Name	FN1523-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1523-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2607388	A-G	HET	INTRON
SBS	Chr1	7401263	A-G	HET	INTRON
SBS	Chr1	27206905	T-A	Homo	INTERGENIC
SBS	Chr1	36085828	G-C	Homo	INTERGENIC
SBS	Chr3	6763720	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g12680
SBS	Chr3	15847380	T-G	HET	SYNONYMOUS_CODING
SBS	Chr3	30791890	C-T	HET	INTRON
SBS	Chr4	16377217	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g27710
SBS	Chr4	21264855	T-C	HET	SYNONYMOUS_CODING
SBS	Chr4	27102700	T-A	HET	INTERGENIC
SBS	Chr6	5035783	G-A	HET	INTERGENIC
SBS	Chr6	5559458	G-C	HET	INTERGENIC
SBS	Chr7	2548357	T-A	Homo	INTERGENIC
SBS	Chr7	4047412	G-A	Homo	INTERGENIC
SBS	Chr7	21437104	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g35790
SBS	Chr8	13820887	G-C	HET	INTERGENIC
SBS	Chr9	524177	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g01750
SBS	Chr9	524179	G-T	HET	STOP_GAINED	LOC_Os09g01750
SBS	Chr9	524180	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g01750
SBS	Chr11	4401757	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g08340
SBS	Chr12	4394752	A-T	HET	SYNONYMOUS_CODING
SBS	Chr12	19362790	G-T	HET	INTERGENIC

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2319883	2320608	725
Deletion	Chr4	2543108	2543109	1
Deletion	Chr12	3721893	3721894	1
Deletion	Chr8	4197823	4197837	14
Deletion	Chr8	4904890	4904899	9
Deletion	Chr11	5034417	5034437	20	LOC_Os11g09375
Deletion	Chr2	5477564	5477573	9
Deletion	Chr6	5548637	5548641	4
Deletion	Chr4	7332651	7333059	408	LOC_Os04g13240
Deletion	Chr12	8427284	8427299	15
Deletion	Chr11	8512728	8512854	126
Deletion	Chr12	9059179	9059181	2
Deletion	Chr2	9976863	9976917	54
Deletion	Chr6	11452523	11452524	1
Deletion	Chr3	12818292	12818299	7
Deletion	Chr8	13087476	13087477	1	LOC_Os08g21860
Deletion	Chr12	13667827	13667834	7	LOC_Os12g24050
Deletion	Chr2	13782837	13782846	9
Deletion	Chr4	14494616	14494651	35
Deletion	Chr4	15313144	15313179	35
Deletion	Chr12	16714835	16714836	1
Deletion	Chr12	17932001	17976000	44000	3
Deletion	Chr2	18664430	18664435	5
Deletion	Chr4	20196286	20196290	4
Deletion	Chr8	20499571	20499576	5
Deletion	Chr3	21285304	21285309	5
Deletion	Chr11	24236512	24236517	5
Deletion	Chr6	24880952	24880955	3
Deletion	Chr4	27054251	27054269	18
Deletion	Chr5	27679162	27679170	8
Deletion	Chr3	33330929	33330958	29	LOC_Os03g58530
Deletion	Chr3	33470156	33470162	6

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	7871860	7871861	2
Insertion	Chr4	30425327	30425327	1
Insertion	Chr1	13605495	13605504	10
Insertion	Chr1	14518059	14518082	24
Insertion	Chr2	10580719	10580720	2
Insertion	Chr2	34802688	34802688	1
Insertion	Chr3	27986840	27986840	1	LOC_Os03g49126
Insertion	Chr4	4566851	4566852	2
Insertion	Chr4	12143907	12143948	42
Insertion	Chr6	19224835	19224835	1
Insertion	Chr6	29744170	29744170	1
Insertion	Chr9	18325383	18325383	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	922586	1601096	2
Inversion	Chr1	924106	1601287	LOC_Os01g03820
Inversion	Chr7	9342161	12756615	LOC_Os07g22640
Inversion	Chr4	19884921	20045207
Inversion	Chr4	19884972	20045220

No Translocation

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