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Mutant Information

Mutant Name	FN1525-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1525-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Very Low (Below 24%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32529089	T-A	HET	INTERGENIC
SBS	Chr1	6688311	G-A	HET	INTERGENIC
SBS	Chr10	112595	C-T	HET	INTRON
SBS	Chr10	15824395	T-A	Homo	INTERGENIC
SBS	Chr10	18336562	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	2303604	A-G	HET	INTERGENIC
SBS	Chr10	8025425	C-T	HET	INTERGENIC
SBS	Chr11	18104603	T-A	HET	INTERGENIC
SBS	Chr11	21400846	C-A	HET	INTERGENIC
SBS	Chr11	8965395	G-A	HET	INTERGENIC
SBS	Chr12	17082217	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g28890
SBS	Chr12	18062096	G-A	HET	INTERGENIC
SBS	Chr12	21942756	C-A	HET	INTERGENIC
SBS	Chr2	15097934	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	1799984	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	33850366	A-T	HET	INTERGENIC
SBS	Chr3	21209588	A-G	HET	INTERGENIC
SBS	Chr3	22149135	C-T	HET	INTRON
SBS	Chr3	31102186	C-T	HET	INTERGENIC
SBS	Chr3	327678	A-G	Homo	INTERGENIC
SBS	Chr4	13172648	C-A	HET	INTERGENIC
SBS	Chr4	23710644	G-A	Homo	INTERGENIC
SBS	Chr4	28550098	A-T	Homo	INTERGENIC
SBS	Chr4	6427384	G-A	HET	INTRON
SBS	Chr5	15491106	A-G	HET	INTERGENIC
SBS	Chr5	17100892	C-A	HET	INTERGENIC
SBS	Chr5	7008943	T-C	HET	INTERGENIC
SBS	Chr6	3719328	C-T	HET	INTERGENIC
SBS	Chr7	2259251	T-C	HET	INTERGENIC
SBS	Chr7	755823	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g02300
SBS	Chr7	755824	C-A	HET	STOP_GAINED	LOC_Os07g02300
SBS	Chr7	861909	T-A	HET	INTERGENIC
SBS	Chr8	11836743	A-T	HET	INTERGENIC
SBS	Chr8	15009628	G-A	HET	UTR_3_PRIME
SBS	Chr8	15221859	G-T	HET	INTERGENIC
SBS	Chr8	21499304	A-T	HET	INTERGENIC
SBS	Chr9	13415710	C-T	HET	INTERGENIC

Deletions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	788524	788534	10
Deletion	Chr4	1683502	1683504	2
Deletion	Chr6	2756122	2756124	2
Deletion	Chr10	4360423	4360433	10
Deletion	Chr12	4670650	4670651	1
Deletion	Chr11	6794808	6794811	3	LOC_Os11g12190
Deletion	Chr11	7773279	7773281	2
Deletion	Chr7	9058642	9058643	1	LOC_Os07g15620
Deletion	Chr8	9522621	9522622	1	LOC_Os08g15680
Deletion	Chr10	14047336	14047338	2	LOC_Os10g26810
Deletion	Chr8	14370800	14370804	4
Deletion	Chr9	15546550	15546557	7	LOC_Os09g25900
Deletion	Chr1	16317247	16317305	58
Deletion	Chr7	17194166	17194174	8
Deletion	Chr10	17624523	17624541	18
Deletion	Chr11	17624593	17624594	1
Deletion	Chr12	17822942	17822943	1
Deletion	Chr7	17906283	17906285	2
Deletion	Chr3	20115929	20115931	2
Deletion	Chr12	20382680	20382681	1
Deletion	Chr11	20401117	20401123	6
Deletion	Chr1	20447044	20447046	2
Deletion	Chr11	21756595	21756600	5
Deletion	Chr7	21813145	21813146	1
Deletion	Chr12	22113956	22113962	6
Deletion	Chr10	23051549	23051578	29
Deletion	Chr2	23365183	23365198	15
Deletion	Chr3	25253494	25253505	11	LOC_Os03g44780
Deletion	Chr6	25993801	25993802	1
Deletion	Chr3	26125829	26125839	10
Deletion	Chr5	27370286	27370288	2
Deletion	Chr1	27726933	27726939	6
Deletion	Chr2	28497057	28497070	13
Deletion	Chr1	28507554	28507555	1
Deletion	Chr6	29226533	29226536	3
Deletion	Chr6	29854997	29855008	11	LOC_Os06g49260
Deletion	Chr4	32486210	32486223	13
Deletion	Chr2	34837057	34837069	12
Deletion	Chr2	35130339	35130340	1

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	10065547	10065576	30
Insertion	Chr1	23783017	23783062	46	LOC_Os01g41950
Insertion	Chr1	4006192	4006193	2
Insertion	Chr1	4806996	4807004	9
Insertion	Chr10	10255192	10255202	11
Insertion	Chr10	14887839	14887839	1
Insertion	Chr12	77173	77249	77
Insertion	Chr4	20973567	20973574	8

No Inversion

No Translocation

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr10	5064830	5064830	0	LOC_Os10g09390

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