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Mutant Information

Mutant NameFN1526-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN1526-S Alignment File
Seed AvailabilityYes [Order Seeds]
Phenotype
  • TO:0000326 (Leaf Color) = Normal
  • TO:0000346 (Tiller number) = High (Between 126% and 175%)
  • TO:0000430 (Germination Rate) = Normal (Between 75% and 125%)
For more information, please see this phenotype file
Mapping
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Variant Information

Single base substitutions: 23
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr121801752T-AHETINTERGENIC
SBSChr12665738C-AHETINTRON
SBSChr12695879G-AHETINTERGENIC
SBSChr131420043A-THETINTRON
SBSChr135008744C-GHETINTERGENIC
SBSChr101281700G-THETINTRON
SBSChr101281701A-THETINTRON
SBSChr1016060305G-AHETINTERGENIC
SBSChr1115180057G-AHETINTERGENIC
SBSChr1116212293A-GHETINTRON
SBSChr1117428514G-AHomoINTRON
SBSChr121693482C-THomoINTERGENIC
SBSChr213696406A-THETINTERGENIC
SBSChr234816459C-THomoINTERGENIC
SBSChr414879797A-GHETINTERGENIC
SBSChr518158084G-AHomoINTERGENIC
SBSChr519578950A-GHomoINTERGENIC
SBSChr62421030C-THomoUTR_3_PRIME
SBSChr716194484A-GHETINTERGENIC
SBSChr723153066C-THETINTERGENIC
SBSChr817432490A-THomoINTERGENIC
SBSChr91399392A-THETNON_SYNONYMOUS_CODINGLOC_Os09g02980
SBSChr95465584C-THETNON_SYNONYMOUS_CODINGLOC_Os09g10030

Deletions: 31
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr979172879173810LOC_Os09g02110
DeletionChr12149793214983138
DeletionChr103117363311739734LOC_Os10g06130
DeletionChr12366630936663101
DeletionChr5388985938898601LOC_Os05g07310
DeletionChr11420569342057029
DeletionChr75313001542100010800015
DeletionChr7667115366711541LOC_Os07g12010
DeletionChr9749698274969875
DeletionChr10896753889675413
DeletionChr3901804390180441
DeletionChr110924623109246296
DeletionChr510943421109434243
DeletionChr311819256118215262270LOC_Os03g20880
DeletionChr1212569136125691371LOC_Os12g22284
DeletionChr512614904126149062
DeletionChr312859658128596591
DeletionChr1117093980170939833LOC_Os11g29450
DeletionChr417918001180140009600014
DeletionChr619850157198501636
DeletionChr720517001206100009300012
DeletionChr722334539223345401
DeletionChr6223705212237060584
DeletionChr423681154236811551
DeletionChr724144354241443551
DeletionChr824810669248106734
DeletionChr426746742267467497LOC_Os04g45270
DeletionChr12733188827331996108
DeletionChr129362114293621217
DeletionChr231038833310421553322LOC_Os02g50810
DeletionChr336197599361976001

Insertions: 12
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr1615033861503381
InsertionChr2251914372519150266
InsertionChr311910334119103352
InsertionChr428700438287004381
InsertionChr429519598295195981
InsertionChr4761851876185214
InsertionChr5265268712652694575LOC_Os05g45790image
InsertionChr6999508099950801
InsertionChr7734712773471271
InsertionChr822300161223001633LOC_Os08g35370image
InsertionChr88652045865208238
InsertionChr915067187150671882

Inversions: 2
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr892087839334064
InversionChr892088049334070

No Translocation