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Mutant Information

Mutant Name	FN1527-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1527-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12243692	T-A	Homo	INTRON
SBS	Chr1	12243709	T-A	Homo	SPLICE_SITE_REGION
SBS	Chr1	16673745	T-C	Homo	INTERGENIC
SBS	Chr1	17364457	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr1	17364458	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g31730
SBS	Chr1	28987158	G-A	Homo	INTERGENIC
SBS	Chr1	29752308	C-T	HET	INTERGENIC
SBS	Chr1	29752364	C-T	HET	INTERGENIC
SBS	Chr1	29975787	C-A	Homo	INTERGENIC
SBS	Chr1	31805080	C-T	Homo	INTERGENIC
SBS	Chr1	5946678	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	12824281	G-A	Homo	INTRON
SBS	Chr10	1953673	C-T	Homo	INTRON
SBS	Chr11	13610497	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g24012
SBS	Chr11	14494751	G-A	HET	INTERGENIC
SBS	Chr11	16559318	C-A	Homo	INTERGENIC
SBS	Chr12	10322774	G-T	HET	INTERGENIC
SBS	Chr12	12806022	T-C	HET	INTERGENIC
SBS	Chr2	15075708	T-A	HET	INTERGENIC
SBS	Chr2	24134808	T-G	HET	UTR_3_PRIME
SBS	Chr2	24145902	C-T	HET	INTRON
SBS	Chr3	19517377	C-T	Homo	INTRON
SBS	Chr4	12929522	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g22830
SBS	Chr4	3934835	G-T	HET	INTERGENIC
SBS	Chr4	4824733	G-A	Homo	INTERGENIC
SBS	Chr4	5939594	G-T	HET	INTERGENIC
SBS	Chr5	1785430	T-A	HET	UTR_3_PRIME
SBS	Chr5	21918842	G-A	HET	INTERGENIC
SBS	Chr5	9679524	A-T	Homo	INTERGENIC
SBS	Chr6	9502462	G-A	HET	INTERGENIC
SBS	Chr7	13265470	G-C	HET	INTRON
SBS	Chr7	15731244	G-A	HET	INTERGENIC
SBS	Chr7	29421832	C-T	Homo	INTERGENIC
SBS	Chr7	29421833	A-T	Homo	INTERGENIC
SBS	Chr8	11458210	T-A	HET	INTERGENIC
SBS	Chr8	1687667	A-T	HET	INTRON

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	815631	815632	1
Deletion	Chr8	1006602	1006604	2
Deletion	Chr1	1304854	1304856	2
Deletion	Chr5	1307574	1307575	1
Deletion	Chr5	1590394	1590417	23	LOC_Os05g03670
Deletion	Chr1	2551382	2551390	8
Deletion	Chr8	3253114	3253116	2
Deletion	Chr8	3260332	3260333	1
Deletion	Chr1	5044718	5044719	1
Deletion	Chr10	6318377	6318397	20
Deletion	Chr10	7540885	7540897	12
Deletion	Chr2	8162433	8162444	11
Deletion	Chr11	8162436	8162438	2
Deletion	Chr1	11598262	11598263	1
Deletion	Chr12	15242197	15242259	62
Deletion	Chr7	17425121	17425122	1
Deletion	Chr3	18904340	18904342	2
Deletion	Chr6	22150106	22150107	1
Deletion	Chr7	22351212	22351216	4
Deletion	Chr4	25689574	25689601	27
Deletion	Chr8	27874539	27874540	1
Deletion	Chr6	28273145	28273146	1
Deletion	Chr11	28910326	28910337	11
Deletion	Chr4	32411436	32411441	5	LOC_Os04g54474
Deletion	Chr2	34972201	34972202	1

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	12939819	12939819	1
Insertion	Chr1	14130087	14130151	65
Insertion	Chr1	8290541	8290601	61
Insertion	Chr10	16411114	16411117	4
Insertion	Chr10	4755748	4755749	2
Insertion	Chr11	6295467	6295467	1
Insertion	Chr12	12156034	12156034	1
Insertion	Chr12	21621321	21621321	1
Insertion	Chr12	4117398	4117398	1
Insertion	Chr2	35239312	35239312	1
Insertion	Chr3	26502155	26502156	2
Insertion	Chr4	12945228	12945272	45
Insertion	Chr4	3665455	3665455	1
Insertion	Chr7	10668626	10668626	1
Insertion	Chr8	6491695	6491695	1

No Inversion

No Translocation

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