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Mutant Information

Mutant Name	FN1528-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1528-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (30.76% Albino) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16969455	T-G	HET	INTRON
SBS	Chr1	23997665	C-T	Homo	INTERGENIC
SBS	Chr1	31931304	C-T	Homo	INTERGENIC
SBS	Chr1	33779982	G-T	Homo	INTERGENIC
SBS	Chr10	10630484	C-T	HET	INTERGENIC
SBS	Chr10	18384422	T-G	HET	INTERGENIC
SBS	Chr10	19878286	A-T	HET	INTERGENIC
SBS	Chr10	3158239	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g06170
SBS	Chr12	9781764	T-A	HET	INTRON
SBS	Chr2	29339017	T-C	HET	INTERGENIC
SBS	Chr2	896727	A-T	Homo	INTRON
SBS	Chr3	11743012	C-T	HET	INTRON
SBS	Chr3	14364842	T-C	HET	INTRON
SBS	Chr3	30012003	G-C	HET	INTRON
SBS	Chr3	6875624	A-C	HET	INTERGENIC
SBS	Chr3	9319195	A-C	Homo	INTERGENIC
SBS	Chr4	17461317	A-T	Homo	INTRON
SBS	Chr4	21825147	C-T	Homo	INTERGENIC
SBS	Chr4	28692908	G-A	HET	INTERGENIC
SBS	Chr5	13248569	C-G	HET	INTRON
SBS	Chr5	14087701	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g24360
SBS	Chr5	24858333	T-C	HET	INTERGENIC
SBS	Chr5	7148610	T-A	HET	INTERGENIC
SBS	Chr6	12456513	C-T	Homo	INTERGENIC
SBS	Chr6	12456519	A-G	Homo	INTERGENIC
SBS	Chr6	3671739	C-T	HET	INTERGENIC
SBS	Chr8	14217493	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g23480
SBS	Chr8	17142987	C-T	HET	INTERGENIC
SBS	Chr8	5022225	T-A	HET	INTERGENIC
SBS	Chr9	12160655	C-T	HET	INTERGENIC

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	2216295	2216297	2
Deletion	Chr7	3042001	3098000	56000	8
Deletion	Chr3	3071693	3071694	1
Deletion	Chr7	3543531	3543533	2
Deletion	Chr1	3746064	3746075	11
Deletion	Chr2	4532594	4532604	10
Deletion	Chr6	5807453	5807462	9	LOC_Os06g11070
Deletion	Chr1	8275943	8275955	12
Deletion	Chr11	9375664	9375665	1
Deletion	Chr11	11896806	11896813	7
Deletion	Chr1	12555127	12555135	8
Deletion	Chr5	13285058	13285063	5
Deletion	Chr11	13914270	13914298	28
Deletion	Chr8	14909503	14909507	4	LOC_Os08g24670
Deletion	Chr1	16738962	16738973	11
Deletion	Chr5	17290662	17290663	1
Deletion	Chr3	17791463	17791466	3
Deletion	Chr10	18384427	18384428	1
Deletion	Chr9	18823867	18823873	6
Deletion	Chr4	19810475	19810485	10
Deletion	Chr2	20330631	20330638	7
Deletion	Chr8	21049773	21049777	4
Deletion	Chr9	21572614	21572615	1
Deletion	Chr4	21866646	21866652	6
Deletion	Chr1	22483885	22483910	25
Deletion	Chr5	22496701	22496706	5	LOC_Os05g38380
Deletion	Chr7	23804768	23804771	3
Deletion	Chr3	23863613	23863614	1
Deletion	Chr7	25367604	25367606	2
Deletion	Chr12	27167799	27167806	7
Deletion	Chr4	30665214	30665215	1
Deletion	Chr3	30798910	30798939	29
Deletion	Chr2	31487333	31487343	10
Deletion	Chr1	41029268	41029283	15	LOC_Os01g70890

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	13350422	13350442	21
Insertion	Chr12	3135645	3135645	1
Insertion	Chr2	15513154	15513164	11
Insertion	Chr4	14038665	14038746	82
Insertion	Chr4	14670148	14670226	79
Insertion	Chr4	8398647	8398647	1
Insertion	Chr5	18238070	18238085	16
Insertion	Chr5	29605815	29605850	36
Insertion	Chr5	8882120	8882155	36
Insertion	Chr6	4568621	4568621	1
Insertion	Chr7	1292966	1293001	36
Insertion	Chr7	19164932	19164932	1
Insertion	Chr8	11256225	11256225	1
Insertion	Chr8	27722920	27722921	2
Insertion	Chr9	16220472	16220474	3
Insertion	Chr9	8181381	8181381	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	17848616	21727674	LOC_Os07g30210
Inversion	Chr10	17999867	18150615	LOC_Os10g34030
Inversion	Chr10	18024714	18150620	LOC_Os10g34030

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	15755884	Chr5	20107683	LOC_Os05g34040
Translocation	Chr6	18092328	Chr2	10168583
Translocation	Chr6	18092332	Chr2	10134136
Translocation	Chr8	19390399	Chr3	19732442	LOC_Os08g31350

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